Strain Fitness in Sinorhizobium meliloti 1021 around SMa1450

Experiment: nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1447 and SMa1450 are separated by 488 nucleotidesSMa1450 and SMa1452 are separated by 24 nucleotidesSMa1452 and SMa1454 are separated by 121 nucleotides SMa1447: SMa1447 - Permease, MFS, at 797,393 to 798,706 SMa1447 SMa1450: SMa1450 - thiolase, at 799,195 to 800,385 SMa1450 SMa1452: SMa1452 - hypothetical protein, at 800,410 to 801,177 SMa1452 SMa1454: SMa1454 - AraC family transcriptional regulator, at 801,299 to 802,342 SMa1454 Position (kb) 799 800 801Strain fitness (log2 ratio) -2 -1 0 1at 798.315 kb on + strand, within SMa1447at 798.689 kb on + strandat 799.084 kb on + strandat 799.084 kb on + strandat 799.084 kb on + strandat 799.084 kb on + strandat 799.085 kb on - strandat 799.085 kb on - strandat 799.088 kb on + strandat 799.088 kb on + strandat 799.088 kb on + strandat 799.088 kb on + strandat 799.089 kb on - strandat 799.089 kb on - strandat 799.092 kb on + strandat 799.092 kb on + strandat 799.096 kb on + strandat 799.096 kb on + strandat 799.096 kb on + strandat 799.097 kb on - strandat 799.097 kb on - strandat 799.097 kb on - strandat 799.205 kb on - strandat 799.841 kb on + strand, within SMa1450at 799.841 kb on + strand, within SMa1450at 799.842 kb on - strand, within SMa1450at 799.842 kb on - strand, within SMa1450at 799.872 kb on - strand, within SMa1450at 799.872 kb on - strand, within SMa1450at 799.922 kb on + strand, within SMa1450at 800.009 kb on + strand, within SMa1450at 800.469 kb on + strandat 800.469 kb on + strandat 800.469 kb on + strandat 800.470 kb on - strandat 800.470 kb on - strandat 800.470 kb on - strandat 800.481 kb on + strandat 800.481 kb on + strandat 800.481 kb on + strandat 800.501 kb on + strand, within SMa1452at 800.502 kb on - strand, within SMa1452at 800.502 kb on - strand, within SMa1452at 800.593 kb on - strand, within SMa1452at 800.733 kb on + strand, within SMa1452at 800.734 kb on - strand, within SMa1452at 801.153 kb on + strandat 801.225 kb on - strandat 801.229 kb on + strandat 801.229 kb on + strandat 801.230 kb on - strandat 801.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 20 mM
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798,315 + SMa1447 0.70 -0.2
798,689 + -0.7
799,084 + -0.0
799,084 + +0.2
799,084 + +0.4
799,084 + -0.7
799,085 - -0.6
799,085 - +0.6
799,088 + +0.6
799,088 + -1.2
799,088 + +0.3
799,088 + +0.0
799,089 - -0.1
799,089 - +0.5
799,092 + -0.4
799,092 + -0.5
799,096 + -0.1
799,096 + -0.1
799,096 + -2.1
799,097 - -0.4
799,097 - -0.2
799,097 - +0.2
799,205 - -0.2
799,841 + SMa1450 0.54 +0.8
799,841 + SMa1450 0.54 +0.6
799,842 - SMa1450 0.54 -0.1
799,842 - SMa1450 0.54 +1.7
799,872 - SMa1450 0.57 -0.2
799,872 - SMa1450 0.57 -0.4
799,922 + SMa1450 0.61 +0.5
800,009 + SMa1450 0.68 +0.4
800,469 + +1.1
800,469 + +0.1
800,469 + +1.3
800,470 - +0.7
800,470 - +0.0
800,470 - -0.2
800,481 + -0.1
800,481 + +0.3
800,481 + -0.2
800,501 + SMa1452 0.12 -0.1
800,502 - SMa1452 0.12 -1.1
800,502 - SMa1452 0.12 +0.6
800,593 - SMa1452 0.24 +1.0
800,733 + SMa1452 0.42 -0.1
800,734 - SMa1452 0.42 +0.2
801,153 + +0.4
801,225 - +1.4
801,229 + +0.3
801,229 + -0.1
801,230 - +0.6
801,230 - -0.1

Or see this region's nucleotide sequence