Experiment: nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0404 and SMa0405 are separated by 352 nucleotides SMa0405 and SMa0407 are separated by 352 nucleotides SMa0407 and SMa0412 are separated by 994 nucleotides
SMa0404: SMa0404 - FMN-dependent dehydrogenase, at 219,940 to 221,085
SMa0404
SMa0405: SMa0405 - transposase, fragment, at 221,438 to 221,725
SMa0405
SMa0407: SMa0407 - hypothetical protein, at 222,078 to 222,866
SMa0407
SMa0412: SMa0412 - hypothetical protein, at 223,861 to 224,175
SMa0412
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 221.160 kb on + strand at 221.160 kb on + strand at 221.160 kb on + strand at 221.161 kb on - strand at 221.161 kb on - strand at 221.161 kb on - strand at 221.209 kb on + strand at 221.209 kb on + strand at 221.297 kb on + strand at 221.297 kb on + strand at 221.526 kb on - strand, within SMa0405 at 221.526 kb on - strand, within SMa0405 at 221.698 kb on + strand at 221.699 kb on - strand at 221.813 kb on + strand at 221.822 kb on - strand at 221.854 kb on + strand at 221.888 kb on - strand at 221.941 kb on + strand at 221.942 kb on - strand at 222.055 kb on + strand at 222.055 kb on + strand at 222.056 kb on - strand at 222.062 kb on + strand at 222.063 kb on - strand at 222.063 kb on - strand at 222.063 kb on - strand at 222.069 kb on + strand at 222.070 kb on - strand at 222.187 kb on - strand, within SMa0407 at 222.237 kb on + strand, within SMa0407 at 222.356 kb on + strand, within SMa0407 at 222.415 kb on - strand, within SMa0407 at 222.512 kb on - strand, within SMa0407 at 222.551 kb on + strand, within SMa0407 at 222.555 kb on + strand, within SMa0407 at 222.556 kb on - strand, within SMa0407 at 222.619 kb on + strand, within SMa0407 at 222.619 kb on + strand, within SMa0407 at 222.620 kb on - strand, within SMa0407 at 222.646 kb on + strand, within SMa0407 at 222.646 kb on + strand, within SMa0407 at 222.647 kb on - strand, within SMa0407 at 222.647 kb on - strand, within SMa0407 at 222.767 kb on + strand, within SMa0407 at 222.767 kb on + strand, within SMa0407 at 222.813 kb on + strand at 222.846 kb on + strand at 222.931 kb on + strand at 223.027 kb on + strand at 223.027 kb on + strand at 223.028 kb on - strand at 223.028 kb on - strand at 223.028 kb on - strand at 223.042 kb on + strand at 223.149 kb on + strand at 223.150 kb on - strand at 223.150 kb on - strand at 223.150 kb on - strand at 223.255 kb on - strand at 223.325 kb on + strand at 223.325 kb on + strand at 223.325 kb on + strand at 223.326 kb on - strand at 223.326 kb on - strand at 223.326 kb on - strand at 223.326 kb on - strand at 223.326 kb on - strand at 223.329 kb on + strand at 223.389 kb on + strand at 223.390 kb on - strand at 223.393 kb on + strand at 223.414 kb on + strand at 223.421 kb on + strand at 223.467 kb on + strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.517 kb on + strand at 223.554 kb on + strand at 223.554 kb on + strand at 223.647 kb on + strand at 223.725 kb on + strand at 223.781 kb on + strand at 223.810 kb on + strand at 223.811 kb on - strand at 223.862 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 20 mM remove 221,160 + -0.2 221,160 + +0.4 221,160 + -0.0 221,161 - -0.4 221,161 - -0.4 221,161 - +0.4 221,209 + +0.0 221,209 + -0.0 221,297 + +0.2 221,297 + -1.0 221,526 - SMa0405 0.31 -0.1 221,526 - SMa0405 0.31 -1.0 221,698 + +3.5 221,699 - -1.3 221,813 + +0.2 221,822 - -0.3 221,854 + -0.3 221,888 - +0.4 221,941 + -0.3 221,942 - -0.2 222,055 + -0.5 222,055 + -1.0 222,056 - -0.7 222,062 + +1.9 222,063 - +0.3 222,063 - +0.0 222,063 - +0.1 222,069 + -0.8 222,070 - -0.0 222,187 - SMa0407 0.14 +0.2 222,237 + SMa0407 0.20 +1.0 222,356 + SMa0407 0.35 +0.8 222,415 - SMa0407 0.43 +1.0 222,512 - SMa0407 0.55 +0.6 222,551 + SMa0407 0.60 +0.0 222,555 + SMa0407 0.60 +0.3 222,556 - SMa0407 0.61 +1.1 222,619 + SMa0407 0.69 -0.4 222,619 + SMa0407 0.69 +0.2 222,620 - SMa0407 0.69 -1.5 222,646 + SMa0407 0.72 +0.0 222,646 + SMa0407 0.72 -0.1 222,647 - SMa0407 0.72 +1.5 222,647 - SMa0407 0.72 -0.1 222,767 + SMa0407 0.87 +0.3 222,767 + SMa0407 0.87 +0.7 222,813 + -0.0 222,846 + +0.3 222,931 + -0.1 223,027 + +0.0 223,027 + -0.0 223,028 - +0.1 223,028 - -0.2 223,028 - +1.0 223,042 + -0.3 223,149 + +0.1 223,150 - -0.6 223,150 - +0.1 223,150 - +1.5 223,255 - -0.4 223,325 + +0.0 223,325 + -0.3 223,325 + -0.0 223,326 - +0.0 223,326 - +0.1 223,326 - +0.7 223,326 - +0.2 223,326 - +1.0 223,329 + -0.1 223,389 + +1.8 223,390 - -1.3 223,393 + +0.5 223,414 + +0.0 223,421 + +1.0 223,467 + +0.7 223,468 - -0.0 223,468 - -1.3 223,468 - +0.1 223,517 + +1.2 223,554 + -0.7 223,554 + +0.4 223,647 + +0.0 223,725 + -0.1 223,781 + -1.9 223,810 + +0.1 223,811 - -0.3 223,862 + -0.3
Or see this region's nucleotide sequence