Experiment: nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21463 and SM_b21464 are separated by 213 nucleotides SM_b21464 and SM_b21465 are separated by 100 nucleotides
SM_b21463: SM_b21463 - glycosyl hydrolase, 6-phospho-beta-glucosidase, at 1,389,575 to 1,390,960
_b21463
SM_b21464: SM_b21464 - GntR family transcriptional regulator, at 1,391,174 to 1,391,947
_b21464
SM_b21465: SM_b21465 - HlyD family protein secretion protein, at 1,392,048 to 1,393,367
_b21465
Position (kb)
1391
1392 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1390.215 kb on + strand, within SM_b21463 at 1390.218 kb on + strand, within SM_b21463 at 1390.218 kb on + strand, within SM_b21463 at 1390.219 kb on - strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.222 kb on - strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.225 kb on - strand, within SM_b21463 at 1390.225 kb on - strand, within SM_b21463 at 1390.227 kb on + strand, within SM_b21463 at 1390.228 kb on - strand, within SM_b21463 at 1390.228 kb on - strand, within SM_b21463 at 1390.234 kb on - strand, within SM_b21463 at 1390.234 kb on - strand, within SM_b21463 at 1390.366 kb on + strand, within SM_b21463 at 1390.367 kb on - strand, within SM_b21463 at 1390.389 kb on + strand, within SM_b21463 at 1390.390 kb on - strand, within SM_b21463 at 1390.489 kb on - strand, within SM_b21463 at 1390.584 kb on + strand, within SM_b21463 at 1390.690 kb on + strand, within SM_b21463 at 1390.691 kb on - strand, within SM_b21463 at 1390.732 kb on - strand, within SM_b21463 at 1390.817 kb on + strand, within SM_b21463 at 1390.817 kb on + strand, within SM_b21463 at 1390.817 kb on + strand, within SM_b21463 at 1390.818 kb on - strand, within SM_b21463 at 1390.818 kb on - strand, within SM_b21463 at 1390.819 kb on + strand, within SM_b21463 at 1390.819 kb on + strand, within SM_b21463 at 1390.965 kb on + strand at 1391.237 kb on + strand at 1391.299 kb on + strand, within SM_b21464 at 1391.300 kb on - strand, within SM_b21464 at 1391.333 kb on + strand, within SM_b21464 at 1391.420 kb on + strand, within SM_b21464 at 1391.421 kb on - strand, within SM_b21464 at 1391.421 kb on - strand, within SM_b21464 at 1391.470 kb on + strand, within SM_b21464 at 1391.622 kb on + strand, within SM_b21464 at 1391.712 kb on - strand, within SM_b21464 at 1391.733 kb on - strand, within SM_b21464 at 1391.778 kb on + strand, within SM_b21464 at 1391.779 kb on - strand, within SM_b21464 at 1391.945 kb on + strand at 1391.945 kb on + strand at 1391.967 kb on + strand at 1391.992 kb on + strand at 1391.993 kb on - strand at 1391.993 kb on - strand at 1391.993 kb on - strand at 1392.027 kb on - strand at 1392.027 kb on - strand at 1392.029 kb on + strand at 1392.157 kb on + strand at 1392.220 kb on + strand, within SM_b21465 at 1392.220 kb on + strand, within SM_b21465 at 1392.220 kb on + strand, within SM_b21465 at 1392.221 kb on - strand, within SM_b21465 at 1392.370 kb on - strand, within SM_b21465 at 1392.370 kb on - strand, within SM_b21465 at 1392.452 kb on + strand, within SM_b21465 at 1392.452 kb on + strand, within SM_b21465 at 1392.545 kb on - strand, within SM_b21465 at 1392.545 kb on - strand, within SM_b21465 at 1392.822 kb on + strand, within SM_b21465 at 1392.823 kb on - strand, within SM_b21465 at 1392.823 kb on - strand, within SM_b21465 at 1392.933 kb on + strand, within SM_b21465
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 20 mM remove 1,390,215 + SM_b21463 0.46 -0.3 1,390,218 + SM_b21463 0.46 -0.1 1,390,218 + SM_b21463 0.46 +0.0 1,390,219 - SM_b21463 0.46 -0.3 1,390,221 + SM_b21463 0.47 -2.2 1,390,221 + SM_b21463 0.47 -1.6 1,390,221 + SM_b21463 0.47 +0.6 1,390,221 + SM_b21463 0.47 -0.1 1,390,222 - SM_b21463 0.47 +0.4 1,390,224 + SM_b21463 0.47 +0.0 1,390,224 + SM_b21463 0.47 +0.6 1,390,224 + SM_b21463 0.47 -0.2 1,390,224 + SM_b21463 0.47 -0.6 1,390,225 - SM_b21463 0.47 -0.4 1,390,225 - SM_b21463 0.47 +1.0 1,390,227 + SM_b21463 0.47 -0.0 1,390,228 - SM_b21463 0.47 +0.3 1,390,228 - SM_b21463 0.47 +0.8 1,390,234 - SM_b21463 0.48 +0.2 1,390,234 - SM_b21463 0.48 +0.3 1,390,366 + SM_b21463 0.57 +0.2 1,390,367 - SM_b21463 0.57 -0.2 1,390,389 + SM_b21463 0.59 +0.4 1,390,390 - SM_b21463 0.59 +0.3 1,390,489 - SM_b21463 0.66 +0.0 1,390,584 + SM_b21463 0.73 -0.3 1,390,690 + SM_b21463 0.80 +0.3 1,390,691 - SM_b21463 0.81 +0.6 1,390,732 - SM_b21463 0.83 +0.0 1,390,817 + SM_b21463 0.90 -0.2 1,390,817 + SM_b21463 0.90 -0.2 1,390,817 + SM_b21463 0.90 +0.9 1,390,818 - SM_b21463 0.90 -0.6 1,390,818 - SM_b21463 0.90 -0.3 1,390,819 + SM_b21463 0.90 +0.1 1,390,819 + SM_b21463 0.90 +0.2 1,390,965 + +0.2 1,391,237 + -0.1 1,391,299 + SM_b21464 0.16 -1.6 1,391,300 - SM_b21464 0.16 -0.2 1,391,333 + SM_b21464 0.21 +0.8 1,391,420 + SM_b21464 0.32 -0.2 1,391,421 - SM_b21464 0.32 -0.0 1,391,421 - SM_b21464 0.32 +0.5 1,391,470 + SM_b21464 0.38 +0.2 1,391,622 + SM_b21464 0.58 -0.0 1,391,712 - SM_b21464 0.70 -1.2 1,391,733 - SM_b21464 0.72 +0.1 1,391,778 + SM_b21464 0.78 -0.9 1,391,779 - SM_b21464 0.78 +0.3 1,391,945 + +0.0 1,391,945 + +0.1 1,391,967 + +0.5 1,391,992 + -0.7 1,391,993 - -0.8 1,391,993 - -1.0 1,391,993 - -0.0 1,392,027 - +0.3 1,392,027 - +0.5 1,392,029 + -0.3 1,392,157 + -0.3 1,392,220 + SM_b21465 0.13 -0.2 1,392,220 + SM_b21465 0.13 +0.8 1,392,220 + SM_b21465 0.13 +0.4 1,392,221 - SM_b21465 0.13 +1.0 1,392,370 - SM_b21465 0.24 +1.2 1,392,370 - SM_b21465 0.24 +0.2 1,392,452 + SM_b21465 0.31 -0.3 1,392,452 + SM_b21465 0.31 +0.3 1,392,545 - SM_b21465 0.38 +3.0 1,392,545 - SM_b21465 0.38 -0.1 1,392,822 + SM_b21465 0.59 +0.5 1,392,823 - SM_b21465 0.59 +0.3 1,392,823 - SM_b21465 0.59 +0.7 1,392,933 + SM_b21465 0.67 -0.2
Or see this region's nucleotide sequence