Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20510

Experiment: nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20509 and SM_b20510 are separated by 46 nucleotidesSM_b20510 and SM_b20511 are separated by 30 nucleotides SM_b20509: SM_b20509 - transcriptional regulator, at 531,624 to 532,391 _b20509 SM_b20510: SM_b20510 - galactonate dehydratase, at 532,438 to 533,586 _b20510 SM_b20511: SM_b20511 - short-chain dehydrogenase, at 533,617 to 534,396 _b20511 Position (kb) 532 533 534Strain fitness (log2 ratio) -1 0 1at 531.480 kb on + strandat 531.480 kb on + strandat 531.910 kb on + strand, within SM_b20509at 531.910 kb on + strand, within SM_b20509at 531.974 kb on + strand, within SM_b20509at 532.462 kb on + strandat 532.462 kb on + strandat 532.463 kb on - strandat 532.464 kb on + strandat 532.464 kb on + strandat 532.464 kb on + strandat 532.674 kb on + strand, within SM_b20510at 532.674 kb on + strand, within SM_b20510at 532.675 kb on - strand, within SM_b20510at 532.675 kb on - strand, within SM_b20510at 532.786 kb on + strand, within SM_b20510at 532.787 kb on - strand, within SM_b20510at 532.787 kb on - strand, within SM_b20510at 532.787 kb on - strand, within SM_b20510at 532.873 kb on - strand, within SM_b20510at 532.873 kb on - strand, within SM_b20510at 532.913 kb on - strand, within SM_b20510at 533.150 kb on - strand, within SM_b20510at 533.270 kb on - strand, within SM_b20510at 533.270 kb on - strand, within SM_b20510at 533.347 kb on + strand, within SM_b20510at 533.347 kb on + strand, within SM_b20510at 533.347 kb on + strand, within SM_b20510at 533.348 kb on - strand, within SM_b20510at 533.348 kb on - strand, within SM_b20510at 533.349 kb on + strand, within SM_b20510at 533.350 kb on - strand, within SM_b20510at 533.350 kb on - strand, within SM_b20510at 533.414 kb on - strand, within SM_b20510at 533.440 kb on + strand, within SM_b20510at 533.503 kb on + strandat 533.808 kb on + strand, within SM_b20511at 533.811 kb on + strand, within SM_b20511at 533.812 kb on - strand, within SM_b20511at 533.952 kb on + strand, within SM_b20511at 534.136 kb on + strand, within SM_b20511at 534.136 kb on + strand, within SM_b20511at 534.178 kb on + strand, within SM_b20511at 534.205 kb on + strand, within SM_b20511at 534.462 kb on + strandat 534.464 kb on + strandat 534.465 kb on - strandat 534.508 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 20 mM
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531,480 + -1.3
531,480 + +0.1
531,910 + SM_b20509 0.37 +0.2
531,910 + SM_b20509 0.37 -0.1
531,974 + SM_b20509 0.46 +0.3
532,462 + -0.4
532,462 + +0.4
532,463 - -0.2
532,464 + -1.6
532,464 + +0.0
532,464 + +0.0
532,674 + SM_b20510 0.21 +0.2
532,674 + SM_b20510 0.21 +0.4
532,675 - SM_b20510 0.21 +1.1
532,675 - SM_b20510 0.21 -0.3
532,786 + SM_b20510 0.30 +1.2
532,787 - SM_b20510 0.30 +0.0
532,787 - SM_b20510 0.30 -0.1
532,787 - SM_b20510 0.30 +0.4
532,873 - SM_b20510 0.38 -0.6
532,873 - SM_b20510 0.38 +1.2
532,913 - SM_b20510 0.41 -0.4
533,150 - SM_b20510 0.62 -0.1
533,270 - SM_b20510 0.72 -1.0
533,270 - SM_b20510 0.72 +0.3
533,347 + SM_b20510 0.79 -0.1
533,347 + SM_b20510 0.79 -0.0
533,347 + SM_b20510 0.79 +0.9
533,348 - SM_b20510 0.79 -1.1
533,348 - SM_b20510 0.79 -0.8
533,349 + SM_b20510 0.79 +0.1
533,350 - SM_b20510 0.79 +0.7
533,350 - SM_b20510 0.79 +0.8
533,414 - SM_b20510 0.85 +0.0
533,440 + SM_b20510 0.87 +0.0
533,503 + -0.3
533,808 + SM_b20511 0.24 -0.0
533,811 + SM_b20511 0.25 -0.4
533,812 - SM_b20511 0.25 -0.1
533,952 + SM_b20511 0.43 +0.0
534,136 + SM_b20511 0.67 +0.3
534,136 + SM_b20511 0.67 +0.2
534,178 + SM_b20511 0.72 +0.1
534,205 + SM_b20511 0.75 -0.3
534,462 + +0.0
534,464 + -0.3
534,465 - -0.6
534,508 + +0.1

Or see this region's nucleotide sequence