Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS34255 and RR42_RS34260 are separated by 112 nucleotides RR42_RS34260 and RR42_RS34265 are separated by 109 nucleotides RR42_RS34265 and RR42_RS34270 are separated by 52 nucleotides
RR42_RS34255: RR42_RS34255 - aldehyde dehydrogenase, at 3,113,161 to 3,114,681
_RS34255
RR42_RS34260: RR42_RS34260 - Alcohol dehydrogenase (EC 1.1.1.1) (from data) , at 3,114,794 to 3,115,822
_RS34260
RR42_RS34265: RR42_RS34265 - acetaldehyde dehydrogenase, at 3,115,932 to 3,116,324
_RS34265
RR42_RS34270: RR42_RS34270 - Fis family transcriptional regulator, at 3,116,377 to 3,118,302
_RS34270
Position (kb)
3114
3115
3116 Strain fitness (log2 ratio)
-2
-1
0
1 at 3113.875 kb on - strand, within RR42_RS34255 at 3113.971 kb on + strand, within RR42_RS34255 at 3114.101 kb on - strand, within RR42_RS34255 at 3114.223 kb on + strand, within RR42_RS34255 at 3114.224 kb on - strand, within RR42_RS34255 at 3114.310 kb on + strand, within RR42_RS34255 at 3114.310 kb on + strand, within RR42_RS34255 at 3114.310 kb on + strand, within RR42_RS34255 at 3114.310 kb on + strand, within RR42_RS34255 at 3114.311 kb on - strand, within RR42_RS34255 at 3114.311 kb on - strand, within RR42_RS34255 at 3114.442 kb on + strand, within RR42_RS34255 at 3114.442 kb on + strand, within RR42_RS34255 at 3114.535 kb on + strand at 3114.536 kb on - strand at 3114.571 kb on + strand at 3114.571 kb on + strand at 3114.682 kb on + strand at 3115.001 kb on + strand, within RR42_RS34260 at 3115.002 kb on - strand, within RR42_RS34260 at 3115.002 kb on - strand, within RR42_RS34260 at 3115.146 kb on - strand, within RR42_RS34260 at 3115.172 kb on + strand, within RR42_RS34260 at 3115.172 kb on + strand, within RR42_RS34260 at 3115.173 kb on - strand, within RR42_RS34260 at 3115.173 kb on - strand, within RR42_RS34260 at 3115.173 kb on - strand, within RR42_RS34260 at 3115.193 kb on + strand, within RR42_RS34260 at 3115.353 kb on - strand, within RR42_RS34260 at 3115.353 kb on - strand, within RR42_RS34260 at 3115.642 kb on + strand, within RR42_RS34260 at 3115.643 kb on - strand, within RR42_RS34260 at 3116.148 kb on + strand, within RR42_RS34265 at 3116.172 kb on - strand, within RR42_RS34265 at 3116.203 kb on + strand, within RR42_RS34265 at 3116.203 kb on + strand, within RR42_RS34265 at 3116.204 kb on - strand, within RR42_RS34265 at 3116.378 kb on + strand at 3116.378 kb on + strand at 3116.379 kb on - strand at 3116.379 kb on - strand at 3116.379 kb on - strand at 3116.399 kb on + strand at 3116.399 kb on + strand at 3116.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,113,875 - RR42_RS34255 0.47 -2.7 3,113,971 + RR42_RS34255 0.53 -2.0 3,114,101 - RR42_RS34255 0.62 -1.8 3,114,223 + RR42_RS34255 0.70 -0.4 3,114,224 - RR42_RS34255 0.70 -2.0 3,114,310 + RR42_RS34255 0.76 -1.8 3,114,310 + RR42_RS34255 0.76 -0.7 3,114,310 + RR42_RS34255 0.76 -1.3 3,114,310 + RR42_RS34255 0.76 -1.2 3,114,311 - RR42_RS34255 0.76 +0.4 3,114,311 - RR42_RS34255 0.76 -1.0 3,114,442 + RR42_RS34255 0.84 -2.0 3,114,442 + RR42_RS34255 0.84 -1.4 3,114,535 + -1.6 3,114,536 - -0.2 3,114,571 + -2.1 3,114,571 + -2.5 3,114,682 + -0.1 3,115,001 + RR42_RS34260 0.20 -0.5 3,115,002 - RR42_RS34260 0.20 -1.5 3,115,002 - RR42_RS34260 0.20 -2.5 3,115,146 - RR42_RS34260 0.34 -1.3 3,115,172 + RR42_RS34260 0.37 -1.5 3,115,172 + RR42_RS34260 0.37 -1.0 3,115,173 - RR42_RS34260 0.37 +0.8 3,115,173 - RR42_RS34260 0.37 -1.5 3,115,173 - RR42_RS34260 0.37 -0.7 3,115,193 + RR42_RS34260 0.39 -0.5 3,115,353 - RR42_RS34260 0.54 -1.0 3,115,353 - RR42_RS34260 0.54 -2.0 3,115,642 + RR42_RS34260 0.82 -2.3 3,115,643 - RR42_RS34260 0.83 -1.4 3,116,148 + RR42_RS34265 0.55 -1.2 3,116,172 - RR42_RS34265 0.61 +0.0 3,116,203 + RR42_RS34265 0.69 +0.4 3,116,203 + RR42_RS34265 0.69 -0.5 3,116,204 - RR42_RS34265 0.69 +0.0 3,116,378 + -0.6 3,116,378 + -0.0 3,116,379 - +0.4 3,116,379 - -0.3 3,116,379 - -0.1 3,116,399 + +0.3 3,116,399 + -2.0 3,116,407 - -1.4
Or see this region's nucleotide sequence