Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28840

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28835 and RR42_RS28840 are separated by 116 nucleotidesRR42_RS28840 and RR42_RS28845 are separated by 40 nucleotides RR42_RS28835: RR42_RS28835 - gluconate:H+ symporter (gntT) (from data), at 1,822,732 to 1,824,093 _RS28835 RR42_RS28840: RR42_RS28840 - hypothetical protein, at 1,824,210 to 1,824,602 _RS28840 RR42_RS28845: RR42_RS28845 - D-aminoacylase, at 1,824,643 to 1,826,136 _RS28845 Position (kb) 1824 1825Strain fitness (log2 ratio) -2 -1 0 1 2at 1823.228 kb on + strand, within RR42_RS28835at 1823.228 kb on + strand, within RR42_RS28835at 1823.229 kb on - strand, within RR42_RS28835at 1823.229 kb on - strand, within RR42_RS28835at 1823.229 kb on - strand, within RR42_RS28835at 1823.229 kb on - strand, within RR42_RS28835at 1823.229 kb on - strand, within RR42_RS28835at 1823.511 kb on + strand, within RR42_RS28835at 1823.511 kb on + strand, within RR42_RS28835at 1823.574 kb on - strand, within RR42_RS28835at 1823.574 kb on - strand, within RR42_RS28835at 1823.755 kb on - strand, within RR42_RS28835at 1823.755 kb on - strand, within RR42_RS28835at 1823.911 kb on + strand, within RR42_RS28835at 1823.911 kb on + strand, within RR42_RS28835at 1823.995 kb on - strandat 1824.059 kb on + strandat 1824.059 kb on + strandat 1824.229 kb on + strandat 1824.508 kb on + strand, within RR42_RS28840at 1824.508 kb on + strand, within RR42_RS28840at 1824.508 kb on + strand, within RR42_RS28840at 1824.508 kb on + strand, within RR42_RS28840at 1824.509 kb on - strand, within RR42_RS28840at 1824.596 kb on + strandat 1824.636 kb on + strandat 1824.636 kb on + strandat 1824.636 kb on + strandat 1824.637 kb on - strandat 1824.637 kb on - strandat 1824.637 kb on - strandat 1824.637 kb on - strandat 1824.637 kb on - strandat 1824.637 kb on - strandat 1824.644 kb on + strandat 1824.645 kb on - strandat 1824.848 kb on + strand, within RR42_RS28845at 1825.092 kb on - strand, within RR42_RS28845at 1825.092 kb on - strand, within RR42_RS28845at 1825.092 kb on - strand, within RR42_RS28845at 1825.268 kb on + strand, within RR42_RS28845at 1825.268 kb on + strand, within RR42_RS28845at 1825.275 kb on - strand, within RR42_RS28845at 1825.371 kb on + strand, within RR42_RS28845at 1825.371 kb on + strand, within RR42_RS28845at 1825.371 kb on + strand, within RR42_RS28845at 1825.371 kb on + strand, within RR42_RS28845at 1825.372 kb on - strand, within RR42_RS28845at 1825.547 kb on + strand, within RR42_RS28845

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,823,228 + RR42_RS28835 0.36 +0.2
1,823,228 + RR42_RS28835 0.36 -0.6
1,823,229 - RR42_RS28835 0.36 -0.2
1,823,229 - RR42_RS28835 0.36 -0.0
1,823,229 - RR42_RS28835 0.36 +0.0
1,823,229 - RR42_RS28835 0.36 +0.7
1,823,229 - RR42_RS28835 0.36 +0.7
1,823,511 + RR42_RS28835 0.57 +0.0
1,823,511 + RR42_RS28835 0.57 -0.4
1,823,574 - RR42_RS28835 0.62 +1.3
1,823,574 - RR42_RS28835 0.62 +0.1
1,823,755 - RR42_RS28835 0.75 -0.1
1,823,755 - RR42_RS28835 0.75 +0.7
1,823,911 + RR42_RS28835 0.87 -0.4
1,823,911 + RR42_RS28835 0.87 -0.4
1,823,995 - -1.6
1,824,059 + -0.4
1,824,059 + +1.0
1,824,229 + -0.5
1,824,508 + RR42_RS28840 0.76 +0.2
1,824,508 + RR42_RS28840 0.76 +0.2
1,824,508 + RR42_RS28840 0.76 +0.7
1,824,508 + RR42_RS28840 0.76 +0.4
1,824,509 - RR42_RS28840 0.76 +0.0
1,824,596 + +0.4
1,824,636 + +0.1
1,824,636 + -0.2
1,824,636 + +0.5
1,824,637 - +0.0
1,824,637 - +0.3
1,824,637 - -0.8
1,824,637 - -0.4
1,824,637 - +0.1
1,824,637 - -0.1
1,824,644 + +2.6
1,824,645 - +0.1
1,824,848 + RR42_RS28845 0.14 -0.5
1,825,092 - RR42_RS28845 0.30 -0.6
1,825,092 - RR42_RS28845 0.30 -0.6
1,825,092 - RR42_RS28845 0.30 +0.3
1,825,268 + RR42_RS28845 0.42 +0.6
1,825,268 + RR42_RS28845 0.42 +0.1
1,825,275 - RR42_RS28845 0.42 +0.2
1,825,371 + RR42_RS28845 0.49 +0.2
1,825,371 + RR42_RS28845 0.49 -0.3
1,825,371 + RR42_RS28845 0.49 +0.1
1,825,371 + RR42_RS28845 0.49 +0.3
1,825,372 - RR42_RS28845 0.49 -2.1
1,825,547 + RR42_RS28845 0.61 +0.8

Or see this region's nucleotide sequence