Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25800

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25790 and RR42_RS25795 overlap by 23 nucleotidesRR42_RS25795 and RR42_RS25800 are separated by 40 nucleotidesRR42_RS25800 and RR42_RS25805 are separated by 81 nucleotides RR42_RS25790: RR42_RS25790 - acylaldehyde oxidase, at 1,125,173 to 1,127,419 _RS25790 RR42_RS25795: RR42_RS25795 - (2Fe-2S)-binding protein, at 1,127,397 to 1,127,843 _RS25795 RR42_RS25800: RR42_RS25800 - porin, at 1,127,884 to 1,128,963 _RS25800 RR42_RS25805: RR42_RS25805 - hypothetical protein, at 1,129,045 to 1,130,439 _RS25805 Position (kb) 1127 1128 1129Strain fitness (log2 ratio) -2 -1 0 1 2at 1127.010 kb on + strand, within RR42_RS25790at 1127.010 kb on + strand, within RR42_RS25790at 1127.011 kb on - strand, within RR42_RS25790at 1127.037 kb on + strand, within RR42_RS25790at 1127.074 kb on - strand, within RR42_RS25790at 1127.160 kb on + strand, within RR42_RS25790at 1127.160 kb on + strand, within RR42_RS25790at 1127.160 kb on + strand, within RR42_RS25790at 1127.160 kb on + strand, within RR42_RS25790at 1127.161 kb on - strand, within RR42_RS25790at 1127.287 kb on - strandat 1127.298 kb on - strandat 1127.443 kb on + strand, within RR42_RS25795at 1127.444 kb on - strand, within RR42_RS25795at 1127.444 kb on - strand, within RR42_RS25795at 1127.496 kb on - strand, within RR42_RS25795at 1127.555 kb on - strand, within RR42_RS25795at 1127.568 kb on + strand, within RR42_RS25795at 1127.682 kb on + strand, within RR42_RS25795at 1127.704 kb on - strand, within RR42_RS25795at 1127.704 kb on - strand, within RR42_RS25795at 1127.704 kb on - strand, within RR42_RS25795at 1127.723 kb on + strand, within RR42_RS25795at 1127.724 kb on - strand, within RR42_RS25795at 1127.724 kb on - strand, within RR42_RS25795at 1127.729 kb on + strand, within RR42_RS25795at 1127.730 kb on - strand, within RR42_RS25795at 1127.896 kb on - strandat 1127.925 kb on + strandat 1127.985 kb on - strandat 1128.000 kb on - strand, within RR42_RS25800at 1128.023 kb on + strand, within RR42_RS25800at 1128.023 kb on + strand, within RR42_RS25800at 1128.023 kb on + strand, within RR42_RS25800at 1128.026 kb on + strand, within RR42_RS25800at 1128.027 kb on - strand, within RR42_RS25800at 1128.027 kb on - strand, within RR42_RS25800at 1128.027 kb on - strand, within RR42_RS25800at 1128.083 kb on + strand, within RR42_RS25800at 1128.090 kb on + strand, within RR42_RS25800at 1128.172 kb on + strand, within RR42_RS25800at 1128.172 kb on + strand, within RR42_RS25800at 1128.173 kb on - strand, within RR42_RS25800at 1128.188 kb on + strand, within RR42_RS25800at 1128.189 kb on - strand, within RR42_RS25800at 1128.330 kb on + strand, within RR42_RS25800at 1128.392 kb on + strand, within RR42_RS25800at 1128.392 kb on + strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.409 kb on - strand, within RR42_RS25800at 1128.409 kb on - strand, within RR42_RS25800at 1128.409 kb on - strand, within RR42_RS25800at 1128.411 kb on - strand, within RR42_RS25800at 1128.411 kb on - strand, within RR42_RS25800at 1128.411 kb on - strand, within RR42_RS25800at 1128.455 kb on + strand, within RR42_RS25800at 1128.498 kb on - strand, within RR42_RS25800at 1128.501 kb on + strand, within RR42_RS25800at 1128.501 kb on + strand, within RR42_RS25800at 1128.501 kb on + strand, within RR42_RS25800at 1128.502 kb on - strand, within RR42_RS25800at 1128.502 kb on - strand, within RR42_RS25800at 1128.502 kb on - strand, within RR42_RS25800at 1128.557 kb on + strand, within RR42_RS25800at 1128.557 kb on + strand, within RR42_RS25800at 1128.557 kb on + strand, within RR42_RS25800at 1128.563 kb on + strand, within RR42_RS25800at 1128.564 kb on - strand, within RR42_RS25800at 1128.688 kb on + strand, within RR42_RS25800at 1128.689 kb on - strand, within RR42_RS25800at 1128.850 kb on - strand, within RR42_RS25800at 1128.850 kb on - strand, within RR42_RS25800at 1128.888 kb on - strandat 1128.896 kb on - strandat 1128.896 kb on - strandat 1128.948 kb on + strandat 1128.948 kb on + strandat 1128.948 kb on + strandat 1128.949 kb on - strandat 1128.949 kb on - strandat 1128.974 kb on + strandat 1128.974 kb on + strandat 1128.974 kb on + strandat 1128.974 kb on + strandat 1128.975 kb on - strandat 1128.975 kb on - strandat 1129.078 kb on + strandat 1129.079 kb on - strandat 1129.079 kb on - strandat 1129.291 kb on - strand, within RR42_RS25805at 1129.293 kb on - strand, within RR42_RS25805at 1129.293 kb on - strand, within RR42_RS25805at 1129.298 kb on + strand, within RR42_RS25805at 1129.298 kb on + strand, within RR42_RS25805at 1129.298 kb on + strand, within RR42_RS25805at 1129.299 kb on - strand, within RR42_RS25805at 1129.414 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.504 kb on - strand, within RR42_RS25805at 1129.505 kb on + strand, within RR42_RS25805at 1129.505 kb on + strand, within RR42_RS25805at 1129.506 kb on - strand, within RR42_RS25805at 1129.506 kb on - strand, within RR42_RS25805at 1129.556 kb on + strand, within RR42_RS25805at 1129.591 kb on + strand, within RR42_RS25805

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,127,010 + RR42_RS25790 0.82 +0.2
1,127,010 + RR42_RS25790 0.82 -0.1
1,127,011 - RR42_RS25790 0.82 +0.9
1,127,037 + RR42_RS25790 0.83 -0.5
1,127,074 - RR42_RS25790 0.85 +0.3
1,127,160 + RR42_RS25790 0.88 -0.3
1,127,160 + RR42_RS25790 0.88 +0.8
1,127,160 + RR42_RS25790 0.88 -0.3
1,127,160 + RR42_RS25790 0.88 -0.5
1,127,161 - RR42_RS25790 0.88 +0.3
1,127,287 - +0.6
1,127,298 - +1.0
1,127,443 + RR42_RS25795 0.10 -1.6
1,127,444 - RR42_RS25795 0.11 -0.4
1,127,444 - RR42_RS25795 0.11 -0.6
1,127,496 - RR42_RS25795 0.22 -0.1
1,127,555 - RR42_RS25795 0.35 +0.9
1,127,568 + RR42_RS25795 0.38 -0.1
1,127,682 + RR42_RS25795 0.64 +0.2
1,127,704 - RR42_RS25795 0.69 +0.4
1,127,704 - RR42_RS25795 0.69 -0.3
1,127,704 - RR42_RS25795 0.69 +0.1
1,127,723 + RR42_RS25795 0.73 +0.3
1,127,724 - RR42_RS25795 0.73 -0.7
1,127,724 - RR42_RS25795 0.73 -0.6
1,127,729 + RR42_RS25795 0.74 +1.0
1,127,730 - RR42_RS25795 0.74 +0.5
1,127,896 - -0.6
1,127,925 + +0.7
1,127,985 - -1.5
1,128,000 - RR42_RS25800 0.11 -0.6
1,128,023 + RR42_RS25800 0.13 -0.3
1,128,023 + RR42_RS25800 0.13 +0.1
1,128,023 + RR42_RS25800 0.13 +0.2
1,128,026 + RR42_RS25800 0.13 -0.2
1,128,027 - RR42_RS25800 0.13 -0.1
1,128,027 - RR42_RS25800 0.13 -1.3
1,128,027 - RR42_RS25800 0.13 +1.2
1,128,083 + RR42_RS25800 0.18 +0.5
1,128,090 + RR42_RS25800 0.19 +1.4
1,128,172 + RR42_RS25800 0.27 -2.1
1,128,172 + RR42_RS25800 0.27 +1.7
1,128,173 - RR42_RS25800 0.27 +0.2
1,128,188 + RR42_RS25800 0.28 -0.5
1,128,189 - RR42_RS25800 0.28 +0.3
1,128,330 + RR42_RS25800 0.41 -1.3
1,128,392 + RR42_RS25800 0.47 +2.0
1,128,392 + RR42_RS25800 0.47 +0.7
1,128,393 - RR42_RS25800 0.47 -2.4
1,128,393 - RR42_RS25800 0.47 -0.3
1,128,393 - RR42_RS25800 0.47 -0.4
1,128,393 - RR42_RS25800 0.47 -1.7
1,128,409 - RR42_RS25800 0.49 -0.3
1,128,409 - RR42_RS25800 0.49 -2.3
1,128,409 - RR42_RS25800 0.49 +1.0
1,128,411 - RR42_RS25800 0.49 -1.3
1,128,411 - RR42_RS25800 0.49 +1.2
1,128,411 - RR42_RS25800 0.49 +0.2
1,128,455 + RR42_RS25800 0.53 -0.5
1,128,498 - RR42_RS25800 0.57 +1.2
1,128,501 + RR42_RS25800 0.57 -0.5
1,128,501 + RR42_RS25800 0.57 -1.6
1,128,501 + RR42_RS25800 0.57 -1.2
1,128,502 - RR42_RS25800 0.57 -0.8
1,128,502 - RR42_RS25800 0.57 +0.7
1,128,502 - RR42_RS25800 0.57 -0.4
1,128,557 + RR42_RS25800 0.62 -0.2
1,128,557 + RR42_RS25800 0.62 +0.9
1,128,557 + RR42_RS25800 0.62 +0.4
1,128,563 + RR42_RS25800 0.63 -0.9
1,128,564 - RR42_RS25800 0.63 -0.1
1,128,688 + RR42_RS25800 0.74 -0.1
1,128,689 - RR42_RS25800 0.75 +0.3
1,128,850 - RR42_RS25800 0.89 -0.4
1,128,850 - RR42_RS25800 0.89 -0.2
1,128,888 - +0.2
1,128,896 - +0.3
1,128,896 - -0.0
1,128,948 + +0.2
1,128,948 + +0.8
1,128,948 + +0.4
1,128,949 - +0.3
1,128,949 - +0.1
1,128,974 + +0.9
1,128,974 + -0.4
1,128,974 + -1.6
1,128,974 + -0.4
1,128,975 - -0.2
1,128,975 - -0.3
1,129,078 + -1.6
1,129,079 - -0.4
1,129,079 - -1.2
1,129,291 - RR42_RS25805 0.18 -0.4
1,129,293 - RR42_RS25805 0.18 -0.8
1,129,293 - RR42_RS25805 0.18 +0.2
1,129,298 + RR42_RS25805 0.18 -0.3
1,129,298 + RR42_RS25805 0.18 -0.2
1,129,298 + RR42_RS25805 0.18 +0.0
1,129,299 - RR42_RS25805 0.18 +0.2
1,129,414 + RR42_RS25805 0.26 +0.3
1,129,503 + RR42_RS25805 0.33 -0.3
1,129,503 + RR42_RS25805 0.33 +0.1
1,129,503 + RR42_RS25805 0.33 -1.2
1,129,503 + RR42_RS25805 0.33 -1.4
1,129,503 + RR42_RS25805 0.33 +1.0
1,129,503 + RR42_RS25805 0.33 +0.7
1,129,503 + RR42_RS25805 0.33 -1.1
1,129,503 + RR42_RS25805 0.33 -0.9
1,129,503 + RR42_RS25805 0.33 +0.7
1,129,503 + RR42_RS25805 0.33 -0.1
1,129,504 - RR42_RS25805 0.33 -0.8
1,129,505 + RR42_RS25805 0.33 +0.2
1,129,505 + RR42_RS25805 0.33 -1.0
1,129,506 - RR42_RS25805 0.33 -1.0
1,129,506 - RR42_RS25805 0.33 +1.2
1,129,556 + RR42_RS25805 0.37 +1.5
1,129,591 + RR42_RS25805 0.39 -0.5

Or see this region's nucleotide sequence