Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01335 and RR42_RS01340 are separated by 39 nucleotides RR42_RS01340 and RR42_RS01345 are separated by 1 nucleotides
RR42_RS01335: RR42_RS01335 - methylmalonyl-CoA carboxyltransferase, at 302,988 to 304,535
_RS01335
RR42_RS01340: RR42_RS01340 - hypothetical protein, at 304,575 to 305,597
_RS01340
RR42_RS01345: RR42_RS01345 - CoA-binding protein, at 305,599 to 307,710
_RS01345
Position (kb) 304
305
306 Strain fitness (log2 ratio) -1
0
1
2 at 303.619 kb on + strand, within RR42_RS01335 at 303.620 kb on - strand, within RR42_RS01335 at 303.656 kb on + strand, within RR42_RS01335 at 303.733 kb on - strand, within RR42_RS01335 at 303.844 kb on - strand, within RR42_RS01335 at 303.844 kb on - strand, within RR42_RS01335 at 304.161 kb on + strand, within RR42_RS01335 at 304.235 kb on + strand, within RR42_RS01335 at 304.236 kb on - strand, within RR42_RS01335 at 304.236 kb on - strand, within RR42_RS01335 at 304.236 kb on - strand, within RR42_RS01335 at 304.317 kb on + strand, within RR42_RS01335 at 304.317 kb on + strand, within RR42_RS01335 at 304.317 kb on + strand, within RR42_RS01335 at 304.318 kb on - strand, within RR42_RS01335 at 304.568 kb on + strand at 304.568 kb on + strand at 304.569 kb on - strand at 304.569 kb on - strand at 304.569 kb on - strand at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.121 kb on - strand, within RR42_RS01340 at 305.168 kb on + strand, within RR42_RS01340 at 305.175 kb on + strand, within RR42_RS01340 at 305.175 kb on + strand, within RR42_RS01340 at 305.176 kb on - strand, within RR42_RS01340 at 305.361 kb on + strand, within RR42_RS01340 at 305.388 kb on + strand, within RR42_RS01340 at 305.388 kb on + strand, within RR42_RS01340 at 305.388 kb on + strand, within RR42_RS01340 at 305.389 kb on - strand, within RR42_RS01340 at 305.389 kb on - strand, within RR42_RS01340 at 305.695 kb on + strand at 305.696 kb on - strand at 305.696 kb on - strand at 305.696 kb on - strand at 305.728 kb on + strand at 305.893 kb on + strand, within RR42_RS01345 at 305.893 kb on + strand, within RR42_RS01345 at 305.893 kb on + strand, within RR42_RS01345 at 305.894 kb on - strand, within RR42_RS01345 at 305.994 kb on + strand, within RR42_RS01345 at 305.995 kb on - strand, within RR42_RS01345 at 306.158 kb on - strand, within RR42_RS01345 at 306.160 kb on - strand, within RR42_RS01345 at 306.250 kb on + strand, within RR42_RS01345 at 306.251 kb on - strand, within RR42_RS01345 at 306.487 kb on - strand, within RR42_RS01345 at 306.551 kb on + strand, within RR42_RS01345 at 306.552 kb on - strand, within RR42_RS01345
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 303,619 + RR42_RS01335 0.41 -1.0 303,620 - RR42_RS01335 0.41 -1.2 303,656 + RR42_RS01335 0.43 -0.2 303,733 - RR42_RS01335 0.48 +0.8 303,844 - RR42_RS01335 0.55 +0.3 303,844 - RR42_RS01335 0.55 -0.0 304,161 + RR42_RS01335 0.76 -1.2 304,235 + RR42_RS01335 0.81 -0.0 304,236 - RR42_RS01335 0.81 -0.9 304,236 - RR42_RS01335 0.81 -0.9 304,236 - RR42_RS01335 0.81 -0.4 304,317 + RR42_RS01335 0.86 -0.3 304,317 + RR42_RS01335 0.86 +0.0 304,317 + RR42_RS01335 0.86 +0.5 304,318 - RR42_RS01335 0.86 -0.6 304,568 + +1.1 304,568 + -0.7 304,569 - +1.6 304,569 - -0.6 304,569 - -0.5 305,120 + RR42_RS01340 0.53 +0.2 305,120 + RR42_RS01340 0.53 +0.8 305,120 + RR42_RS01340 0.53 -0.8 305,120 + RR42_RS01340 0.53 -1.1 305,120 + RR42_RS01340 0.53 +0.3 305,121 - RR42_RS01340 0.53 +0.4 305,168 + RR42_RS01340 0.58 -0.2 305,175 + RR42_RS01340 0.59 +1.4 305,175 + RR42_RS01340 0.59 -0.6 305,176 - RR42_RS01340 0.59 +0.6 305,361 + RR42_RS01340 0.77 -0.2 305,388 + RR42_RS01340 0.79 +0.3 305,388 + RR42_RS01340 0.79 +0.1 305,388 + RR42_RS01340 0.79 +1.6 305,389 - RR42_RS01340 0.80 +0.5 305,389 - RR42_RS01340 0.80 +0.3 305,695 + -0.1 305,696 - -0.5 305,696 - +0.1 305,696 - +0.2 305,728 + -1.1 305,893 + RR42_RS01345 0.14 -0.1 305,893 + RR42_RS01345 0.14 -0.5 305,893 + RR42_RS01345 0.14 -0.4 305,894 - RR42_RS01345 0.14 +0.1 305,994 + RR42_RS01345 0.19 +1.3 305,995 - RR42_RS01345 0.19 +2.1 306,158 - RR42_RS01345 0.26 +0.6 306,160 - RR42_RS01345 0.27 -0.3 306,250 + RR42_RS01345 0.31 -0.5 306,251 - RR42_RS01345 0.31 -0.6 306,487 - RR42_RS01345 0.42 +0.7 306,551 + RR42_RS01345 0.45 +1.3 306,552 - RR42_RS01345 0.45 -0.5
Or see this region's nucleotide sequence