Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03000

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02990 and MMP_RS02995 are separated by 20 nucleotidesMMP_RS02995 and MMP_RS03000 are separated by 22 nucleotidesMMP_RS03000 and MMP_RS03005 are separated by 190 nucleotides MMP_RS02990: MMP_RS02990 - AMP-binding protein, at 565,697 to 567,346 _RS02990 MMP_RS02995: MMP_RS02995 - acyl-CoA thioesterase, at 567,367 to 567,774 _RS02995 MMP_RS03000: MMP_RS03000 - cupin domain-containing protein, at 567,797 to 568,336 _RS03000 MMP_RS03005: MMP_RS03005 - S-layer protein, at 568,527 to 570,113 _RS03005 Position (kb) 567 568 569Strain fitness (log2 ratio) -2 -1 0 1at 566.858 kb on + strand, within MMP_RS02990at 566.858 kb on + strand, within MMP_RS02990at 566.863 kb on + strand, within MMP_RS02990at 566.907 kb on + strand, within MMP_RS02990at 566.993 kb on - strand, within MMP_RS02990at 566.994 kb on + strand, within MMP_RS02990at 567.072 kb on - strand, within MMP_RS02990at 567.072 kb on - strand, within MMP_RS02990at 567.152 kb on + strand, within MMP_RS02990at 567.328 kb on - strandat 567.347 kb on + strandat 567.362 kb on - strandat 567.398 kb on + strandat 567.398 kb on + strandat 567.512 kb on - strand, within MMP_RS02995at 567.520 kb on + strand, within MMP_RS02995at 567.549 kb on + strand, within MMP_RS02995at 567.578 kb on - strand, within MMP_RS02995at 567.578 kb on - strand, within MMP_RS02995at 567.641 kb on + strand, within MMP_RS02995at 567.681 kb on - strand, within MMP_RS02995at 567.718 kb on - strand, within MMP_RS02995at 567.810 kb on - strandat 567.811 kb on + strandat 567.811 kb on + strandat 567.812 kb on - strandat 567.815 kb on - strandat 567.815 kb on - strandat 567.816 kb on + strandat 567.854 kb on - strand, within MMP_RS03000at 567.855 kb on + strand, within MMP_RS03000at 567.855 kb on + strand, within MMP_RS03000at 567.869 kb on - strand, within MMP_RS03000at 567.870 kb on + strand, within MMP_RS03000at 567.879 kb on - strand, within MMP_RS03000at 567.879 kb on - strand, within MMP_RS03000at 567.880 kb on + strand, within MMP_RS03000at 567.882 kb on - strand, within MMP_RS03000at 567.882 kb on - strand, within MMP_RS03000at 567.882 kb on - strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.884 kb on - strand, within MMP_RS03000at 567.884 kb on - strand, within MMP_RS03000at 567.885 kb on + strand, within MMP_RS03000at 567.885 kb on + strand, within MMP_RS03000at 567.909 kb on - strand, within MMP_RS03000at 567.924 kb on - strand, within MMP_RS03000at 567.950 kb on - strand, within MMP_RS03000at 567.951 kb on + strand, within MMP_RS03000at 567.951 kb on + strand, within MMP_RS03000at 567.954 kb on - strand, within MMP_RS03000at 567.955 kb on + strand, within MMP_RS03000at 567.955 kb on + strand, within MMP_RS03000at 568.019 kb on - strand, within MMP_RS03000at 568.100 kb on - strand, within MMP_RS03000at 568.101 kb on + strand, within MMP_RS03000at 568.285 kb on - strandat 568.386 kb on + strandat 568.424 kb on - strandat 568.437 kb on + strandat 568.440 kb on - strandat 568.570 kb on - strandat 568.602 kb on + strandat 568.766 kb on - strand, within MMP_RS03005at 568.766 kb on - strand, within MMP_RS03005at 568.770 kb on - strand, within MMP_RS03005at 568.862 kb on - strand, within MMP_RS03005at 568.862 kb on - strand, within MMP_RS03005at 568.890 kb on - strand, within MMP_RS03005at 568.944 kb on + strand, within MMP_RS03005at 568.957 kb on - strand, within MMP_RS03005at 568.959 kb on - strand, within MMP_RS03005at 568.959 kb on - strand, within MMP_RS03005at 568.983 kb on + strand, within MMP_RS03005at 569.091 kb on + strand, within MMP_RS03005at 569.219 kb on - strand, within MMP_RS03005at 569.219 kb on - strand, within MMP_RS03005at 569.225 kb on - strand, within MMP_RS03005at 569.261 kb on + strand, within MMP_RS03005at 569.316 kb on - strand, within MMP_RS03005at 569.320 kb on - strand, within MMP_RS03005

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE
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566,858 + MMP_RS02990 0.70 +0.0
566,858 + MMP_RS02990 0.70 +0.2
566,863 + MMP_RS02990 0.71 -0.2
566,907 + MMP_RS02990 0.73 +0.2
566,993 - MMP_RS02990 0.79 -0.0
566,994 + MMP_RS02990 0.79 -0.2
567,072 - MMP_RS02990 0.83 -0.6
567,072 - MMP_RS02990 0.83 +0.6
567,152 + MMP_RS02990 0.88 -0.1
567,328 - -0.9
567,347 + +0.1
567,362 - +0.3
567,398 + -0.4
567,398 + -0.5
567,512 - MMP_RS02995 0.36 -0.7
567,520 + MMP_RS02995 0.38 -1.4
567,549 + MMP_RS02995 0.45 -0.1
567,578 - MMP_RS02995 0.52 -0.6
567,578 - MMP_RS02995 0.52 -0.0
567,641 + MMP_RS02995 0.67 -0.7
567,681 - MMP_RS02995 0.77 -0.0
567,718 - MMP_RS02995 0.86 -0.4
567,810 - -0.4
567,811 + -0.2
567,811 + -0.2
567,812 - -0.3
567,815 - -0.1
567,815 - -1.1
567,816 + -0.7
567,854 - MMP_RS03000 0.11 -0.3
567,855 + MMP_RS03000 0.11 -0.2
567,855 + MMP_RS03000 0.11 -0.6
567,869 - MMP_RS03000 0.13 -0.3
567,870 + MMP_RS03000 0.14 -0.0
567,879 - MMP_RS03000 0.15 -1.0
567,879 - MMP_RS03000 0.15 -2.6
567,880 + MMP_RS03000 0.15 -0.7
567,882 - MMP_RS03000 0.16 -0.6
567,882 - MMP_RS03000 0.16 -0.1
567,882 - MMP_RS03000 0.16 -0.3
567,883 + MMP_RS03000 0.16 -0.8
567,883 + MMP_RS03000 0.16 -0.6
567,883 + MMP_RS03000 0.16 -0.1
567,883 + MMP_RS03000 0.16 -1.1
567,884 - MMP_RS03000 0.16 -0.7
567,884 - MMP_RS03000 0.16 -0.1
567,885 + MMP_RS03000 0.16 -0.5
567,885 + MMP_RS03000 0.16 -0.5
567,909 - MMP_RS03000 0.21 -0.6
567,924 - MMP_RS03000 0.24 -0.2
567,950 - MMP_RS03000 0.28 -0.0
567,951 + MMP_RS03000 0.29 -0.8
567,951 + MMP_RS03000 0.29 +0.1
567,954 - MMP_RS03000 0.29 +1.0
567,955 + MMP_RS03000 0.29 -0.2
567,955 + MMP_RS03000 0.29 -0.6
568,019 - MMP_RS03000 0.41 +0.0
568,100 - MMP_RS03000 0.56 -0.6
568,101 + MMP_RS03000 0.56 +0.1
568,285 - -0.5
568,386 + -0.3
568,424 - -0.5
568,437 + +0.1
568,440 - +0.8
568,570 - +0.1
568,602 + +0.4
568,766 - MMP_RS03005 0.15 +0.8
568,766 - MMP_RS03005 0.15 -0.4
568,770 - MMP_RS03005 0.15 -0.1
568,862 - MMP_RS03005 0.21 +0.4
568,862 - MMP_RS03005 0.21 +0.1
568,890 - MMP_RS03005 0.23 -0.8
568,944 + MMP_RS03005 0.26 -0.0
568,957 - MMP_RS03005 0.27 -0.3
568,959 - MMP_RS03005 0.27 -1.4
568,959 - MMP_RS03005 0.27 -0.1
568,983 + MMP_RS03005 0.29 +0.7
569,091 + MMP_RS03005 0.36 -0.3
569,219 - MMP_RS03005 0.44 +0.1
569,219 - MMP_RS03005 0.44 -0.1
569,225 - MMP_RS03005 0.44 +0.4
569,261 + MMP_RS03005 0.46 -0.3
569,316 - MMP_RS03005 0.50 -0.2
569,320 - MMP_RS03005 0.50 -0.2

Or see this region's nucleotide sequence