Experiment: H2 McCas, 5g/L bicarb, 40 psi H2CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02240 and MMJJ_RS02245 are separated by 150 nucleotides MMJJ_RS02245 and MMJJ_RS02250 are separated by 0 nucleotides MMJJ_RS02250 and MMJJ_RS02255 are separated by 4 nucleotides MMJJ_RS02255 and MMJJ_RS02260 are separated by 5 nucleotides MMJJ_RS02260 and MMJJ_RS02265 are separated by 120 nucleotides
MMJJ_RS02240: MMJJ_RS02240 - CGGC domain-containing protein, at 424,643 to 425,056
_RS02240
MMJJ_RS02245: MMJJ_RS02245 - DUF432 domain-containing protein, at 425,207 to 425,845
_RS02245
MMJJ_RS02250: MMJJ_RS02250 - mechanosensitive ion channel family protein, at 425,846 to 426,928
_RS02250
MMJJ_RS02255: MMJJ_RS02255 - hypothetical protein, at 426,933 to 427,163
_RS02255
MMJJ_RS02260: MMJJ_RS02260 - hypothetical protein, at 427,169 to 427,738
_RS02260
MMJJ_RS02265: MMJJ_RS02265 - hypothetical protein, at 427,859 to 429,328
_RS02265
Position (kb) 425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 424.898 kb on + strand, within MMJJ_RS02240 at 424.920 kb on + strand, within MMJJ_RS02240 at 424.948 kb on + strand, within MMJJ_RS02240 at 424.960 kb on + strand, within MMJJ_RS02240 at 425.098 kb on - strand at 425.098 kb on - strand at 425.098 kb on - strand at 425.196 kb on - strand at 425.196 kb on - strand at 425.197 kb on + strand at 425.197 kb on + strand at 425.198 kb on + strand at 425.198 kb on - strand at 425.198 kb on - strand at 425.199 kb on + strand at 425.199 kb on + strand at 425.199 kb on + strand at 425.199 kb on + strand at 425.200 kb on - strand at 425.200 kb on - strand at 425.200 kb on - strand at 425.201 kb on + strand at 425.201 kb on + strand at 425.201 kb on + strand at 425.201 kb on + strand at 425.201 kb on + strand at 425.203 kb on - strand at 425.206 kb on - strand at 425.226 kb on - strand at 425.286 kb on - strand, within MMJJ_RS02245 at 425.294 kb on - strand, within MMJJ_RS02245 at 425.295 kb on + strand, within MMJJ_RS02245 at 425.319 kb on - strand, within MMJJ_RS02245 at 425.388 kb on - strand, within MMJJ_RS02245 at 425.414 kb on + strand, within MMJJ_RS02245 at 425.493 kb on - strand, within MMJJ_RS02245 at 425.494 kb on + strand, within MMJJ_RS02245 at 425.494 kb on + strand, within MMJJ_RS02245 at 425.500 kb on + strand, within MMJJ_RS02245 at 425.522 kb on - strand, within MMJJ_RS02245 at 425.523 kb on + strand, within MMJJ_RS02245 at 425.524 kb on - strand, within MMJJ_RS02245 at 425.547 kb on - strand, within MMJJ_RS02245 at 425.548 kb on + strand, within MMJJ_RS02245 at 425.564 kb on - strand, within MMJJ_RS02245 at 425.565 kb on + strand, within MMJJ_RS02245 at 425.580 kb on - strand, within MMJJ_RS02245 at 425.580 kb on - strand, within MMJJ_RS02245 at 425.580 kb on - strand, within MMJJ_RS02245 at 425.581 kb on + strand, within MMJJ_RS02245 at 425.581 kb on + strand, within MMJJ_RS02245 at 425.581 kb on + strand, within MMJJ_RS02245 at 425.581 kb on + strand, within MMJJ_RS02245 at 425.581 kb on + strand, within MMJJ_RS02245 at 425.583 kb on + strand, within MMJJ_RS02245 at 425.584 kb on - strand, within MMJJ_RS02245 at 425.584 kb on - strand, within MMJJ_RS02245 at 425.584 kb on - strand, within MMJJ_RS02245 at 425.585 kb on + strand, within MMJJ_RS02245 at 425.585 kb on + strand, within MMJJ_RS02245 at 425.587 kb on - strand, within MMJJ_RS02245 at 425.587 kb on - strand, within MMJJ_RS02245 at 425.587 kb on - strand, within MMJJ_RS02245 at 425.588 kb on + strand, within MMJJ_RS02245 at 425.626 kb on - strand, within MMJJ_RS02245 at 425.688 kb on - strand, within MMJJ_RS02245 at 425.689 kb on + strand, within MMJJ_RS02245 at 425.689 kb on + strand, within MMJJ_RS02245 at 425.693 kb on - strand, within MMJJ_RS02245 at 425.694 kb on + strand, within MMJJ_RS02245 at 425.932 kb on + strand at 426.010 kb on + strand, within MMJJ_RS02250 at 426.048 kb on - strand, within MMJJ_RS02250 at 426.057 kb on - strand, within MMJJ_RS02250 at 426.057 kb on - strand, within MMJJ_RS02250 at 426.058 kb on + strand, within MMJJ_RS02250 at 426.063 kb on - strand, within MMJJ_RS02250 at 426.075 kb on - strand, within MMJJ_RS02250 at 426.076 kb on + strand, within MMJJ_RS02250 at 426.084 kb on - strand, within MMJJ_RS02250 at 426.084 kb on - strand, within MMJJ_RS02250 at 426.097 kb on + strand, within MMJJ_RS02250 at 426.097 kb on + strand, within MMJJ_RS02250 at 426.101 kb on - strand, within MMJJ_RS02250 at 426.102 kb on + strand, within MMJJ_RS02250 at 426.102 kb on + strand, within MMJJ_RS02250 at 426.108 kb on - strand, within MMJJ_RS02250 at 426.108 kb on - strand, within MMJJ_RS02250 at 426.137 kb on - strand, within MMJJ_RS02250 at 426.165 kb on + strand, within MMJJ_RS02250 at 426.314 kb on + strand, within MMJJ_RS02250 at 426.356 kb on + strand, within MMJJ_RS02250 at 426.357 kb on - strand, within MMJJ_RS02250 at 426.358 kb on + strand at 426.526 kb on + strand, within MMJJ_RS02250 at 426.537 kb on - strand, within MMJJ_RS02250 at 426.541 kb on - strand, within MMJJ_RS02250 at 426.541 kb on - strand, within MMJJ_RS02250 at 426.609 kb on - strand, within MMJJ_RS02250 at 426.656 kb on + strand, within MMJJ_RS02250 at 426.656 kb on + strand, within MMJJ_RS02250 at 426.656 kb on + strand, within MMJJ_RS02250 at 426.656 kb on + strand, within MMJJ_RS02250 at 426.666 kb on - strand, within MMJJ_RS02250 at 426.683 kb on - strand, within MMJJ_RS02250 at 426.683 kb on - strand, within MMJJ_RS02250 at 426.684 kb on + strand, within MMJJ_RS02250 at 426.684 kb on + strand, within MMJJ_RS02250 at 426.687 kb on - strand, within MMJJ_RS02250 at 426.687 kb on - strand, within MMJJ_RS02250 at 426.746 kb on + strand, within MMJJ_RS02250 at 426.747 kb on - strand, within MMJJ_RS02250 at 426.747 kb on - strand, within MMJJ_RS02250 at 426.748 kb on + strand, within MMJJ_RS02250 at 426.748 kb on + strand, within MMJJ_RS02250 at 426.753 kb on - strand, within MMJJ_RS02250 at 426.782 kb on - strand, within MMJJ_RS02250 at 426.782 kb on - strand, within MMJJ_RS02250 at 427.146 kb on + strand at 427.164 kb on + strand at 427.255 kb on - strand, within MMJJ_RS02260 at 427.256 kb on + strand, within MMJJ_RS02260 at 427.272 kb on + strand, within MMJJ_RS02260 at 427.274 kb on - strand, within MMJJ_RS02260 at 427.275 kb on + strand, within MMJJ_RS02260 at 427.275 kb on + strand, within MMJJ_RS02260 at 427.280 kb on - strand, within MMJJ_RS02260 at 427.280 kb on - strand, within MMJJ_RS02260 at 427.293 kb on + strand, within MMJJ_RS02260 at 427.293 kb on + strand, within MMJJ_RS02260 at 427.294 kb on - strand, within MMJJ_RS02260 at 427.295 kb on + strand, within MMJJ_RS02260 at 427.298 kb on - strand, within MMJJ_RS02260 at 427.298 kb on - strand, within MMJJ_RS02260 at 427.301 kb on - strand, within MMJJ_RS02260 at 427.302 kb on + strand, within MMJJ_RS02260 at 427.362 kb on - strand, within MMJJ_RS02260 at 427.362 kb on - strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.371 kb on + strand, within MMJJ_RS02260 at 427.371 kb on + strand, within MMJJ_RS02260 at 427.379 kb on - strand, within MMJJ_RS02260 at 427.380 kb on + strand, within MMJJ_RS02260 at 427.380 kb on + strand, within MMJJ_RS02260 at 427.383 kb on + strand, within MMJJ_RS02260 at 427.383 kb on + strand, within MMJJ_RS02260 at 427.383 kb on + strand, within MMJJ_RS02260 at 427.392 kb on + strand, within MMJJ_RS02260 at 427.392 kb on + strand, within MMJJ_RS02260 at 427.392 kb on + strand, within MMJJ_RS02260 at 427.436 kb on - strand, within MMJJ_RS02260 at 427.488 kb on + strand, within MMJJ_RS02260 at 427.622 kb on - strand, within MMJJ_RS02260 at 427.625 kb on - strand, within MMJJ_RS02260 at 427.626 kb on + strand, within MMJJ_RS02260 at 427.643 kb on - strand, within MMJJ_RS02260 at 427.644 kb on + strand, within MMJJ_RS02260 at 427.673 kb on - strand, within MMJJ_RS02260 at 427.673 kb on - strand, within MMJJ_RS02260 at 427.716 kb on - strand at 427.723 kb on - strand at 427.724 kb on + strand at 427.738 kb on - strand at 427.739 kb on + strand at 427.739 kb on + strand at 427.755 kb on + strand at 427.763 kb on - strand at 427.763 kb on - strand at 427.768 kb on - strand at 427.769 kb on + strand at 427.769 kb on + strand at 427.839 kb on - strand at 427.889 kb on - strand at 427.910 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas, 5g/L bicarb, 40 psi H2CO2 remove 424,898 + MMJJ_RS02240 0.62 +0.1 424,920 + MMJJ_RS02240 0.67 -1.0 424,948 + MMJJ_RS02240 0.74 -0.4 424,960 + MMJJ_RS02240 0.77 +0.2 425,098 - +0.1 425,098 - +0.0 425,098 - +0.8 425,196 - +0.2 425,196 - -0.5 425,197 + -1.1 425,197 + -0.1 425,198 + +0.3 425,198 - +0.4 425,198 - -0.0 425,199 + +0.1 425,199 + +1.0 425,199 + -0.5 425,199 + +0.2 425,200 - -0.1 425,200 - -0.0 425,200 - +0.0 425,201 + -0.7 425,201 + -0.6 425,201 + -0.2 425,201 + -0.3 425,201 + +0.0 425,203 - -0.3 425,206 - -0.5 425,226 - -0.1 425,286 - MMJJ_RS02245 0.12 -0.3 425,294 - MMJJ_RS02245 0.14 +0.7 425,295 + MMJJ_RS02245 0.14 +0.7 425,319 - MMJJ_RS02245 0.18 +0.7 425,388 - MMJJ_RS02245 0.28 -1.0 425,414 + MMJJ_RS02245 0.32 +2.5 425,493 - MMJJ_RS02245 0.45 -0.5 425,494 + MMJJ_RS02245 0.45 +0.3 425,494 + MMJJ_RS02245 0.45 +0.2 425,500 + MMJJ_RS02245 0.46 -1.9 425,522 - MMJJ_RS02245 0.49 +1.1 425,523 + MMJJ_RS02245 0.49 +0.2 425,524 - MMJJ_RS02245 0.50 +1.1 425,547 - MMJJ_RS02245 0.53 +0.0 425,548 + MMJJ_RS02245 0.53 +0.2 425,564 - MMJJ_RS02245 0.56 +0.4 425,565 + MMJJ_RS02245 0.56 -0.0 425,580 - MMJJ_RS02245 0.58 +0.1 425,580 - MMJJ_RS02245 0.58 +0.5 425,580 - MMJJ_RS02245 0.58 -0.0 425,581 + MMJJ_RS02245 0.59 +0.2 425,581 + MMJJ_RS02245 0.59 +1.1 425,581 + MMJJ_RS02245 0.59 +0.5 425,581 + MMJJ_RS02245 0.59 -0.5 425,581 + MMJJ_RS02245 0.59 -0.4 425,583 + MMJJ_RS02245 0.59 +0.3 425,584 - MMJJ_RS02245 0.59 -0.1 425,584 - MMJJ_RS02245 0.59 -0.1 425,584 - MMJJ_RS02245 0.59 -0.5 425,585 + MMJJ_RS02245 0.59 +0.3 425,585 + MMJJ_RS02245 0.59 -0.5 425,587 - MMJJ_RS02245 0.59 +0.2 425,587 - MMJJ_RS02245 0.59 +0.4 425,587 - MMJJ_RS02245 0.59 -0.4 425,588 + MMJJ_RS02245 0.60 +0.1 425,626 - MMJJ_RS02245 0.66 +0.6 425,688 - MMJJ_RS02245 0.75 +0.1 425,689 + MMJJ_RS02245 0.75 +1.5 425,689 + MMJJ_RS02245 0.75 +0.3 425,693 - MMJJ_RS02245 0.76 +0.6 425,694 + MMJJ_RS02245 0.76 +0.6 425,932 + -0.1 426,010 + MMJJ_RS02250 0.15 -0.3 426,048 - MMJJ_RS02250 0.19 -0.2 426,057 - MMJJ_RS02250 0.19 +0.0 426,057 - MMJJ_RS02250 0.19 +0.2 426,058 + MMJJ_RS02250 0.20 +0.5 426,063 - MMJJ_RS02250 0.20 +0.3 426,075 - MMJJ_RS02250 0.21 +0.4 426,076 + MMJJ_RS02250 0.21 +0.8 426,084 - MMJJ_RS02250 0.22 +0.3 426,084 - MMJJ_RS02250 0.22 -0.3 426,097 + MMJJ_RS02250 0.23 -0.2 426,097 + MMJJ_RS02250 0.23 -0.5 426,101 - MMJJ_RS02250 0.24 +0.6 426,102 + MMJJ_RS02250 0.24 +0.2 426,102 + MMJJ_RS02250 0.24 +0.8 426,108 - MMJJ_RS02250 0.24 +0.5 426,108 - MMJJ_RS02250 0.24 +0.3 426,137 - MMJJ_RS02250 0.27 +0.4 426,165 + MMJJ_RS02250 0.29 +0.4 426,314 + MMJJ_RS02250 0.43 +1.3 426,356 + MMJJ_RS02250 0.47 -1.5 426,357 - MMJJ_RS02250 0.47 +0.3 426,358 + +0.7 426,526 + MMJJ_RS02250 0.63 -0.4 426,537 - MMJJ_RS02250 0.64 -0.5 426,541 - MMJJ_RS02250 0.64 -0.9 426,541 - MMJJ_RS02250 0.64 +0.4 426,609 - MMJJ_RS02250 0.70 +0.1 426,656 + MMJJ_RS02250 0.75 +0.2 426,656 + MMJJ_RS02250 0.75 +0.4 426,656 + MMJJ_RS02250 0.75 +0.1 426,656 + MMJJ_RS02250 0.75 -0.1 426,666 - MMJJ_RS02250 0.76 -0.0 426,683 - MMJJ_RS02250 0.77 -0.1 426,683 - MMJJ_RS02250 0.77 +0.0 426,684 + MMJJ_RS02250 0.77 +0.8 426,684 + MMJJ_RS02250 0.77 +0.2 426,687 - MMJJ_RS02250 0.78 -0.2 426,687 - MMJJ_RS02250 0.78 -0.2 426,746 + MMJJ_RS02250 0.83 -0.3 426,747 - MMJJ_RS02250 0.83 -0.3 426,747 - MMJJ_RS02250 0.83 -0.7 426,748 + MMJJ_RS02250 0.83 +0.4 426,748 + MMJJ_RS02250 0.83 -0.3 426,753 - MMJJ_RS02250 0.84 +0.1 426,782 - MMJJ_RS02250 0.86 +0.3 426,782 - MMJJ_RS02250 0.86 +1.1 427,146 + +0.4 427,164 + +0.5 427,255 - MMJJ_RS02260 0.15 +0.2 427,256 + MMJJ_RS02260 0.15 +0.2 427,272 + MMJJ_RS02260 0.18 -0.5 427,274 - MMJJ_RS02260 0.18 -0.7 427,275 + MMJJ_RS02260 0.19 +0.5 427,275 + MMJJ_RS02260 0.19 -0.9 427,280 - MMJJ_RS02260 0.19 +0.0 427,280 - MMJJ_RS02260 0.19 +0.3 427,293 + MMJJ_RS02260 0.22 +0.8 427,293 + MMJJ_RS02260 0.22 -0.4 427,294 - MMJJ_RS02260 0.22 -0.2 427,295 + MMJJ_RS02260 0.22 -0.2 427,298 - MMJJ_RS02260 0.23 +1.1 427,298 - MMJJ_RS02260 0.23 -0.0 427,301 - MMJJ_RS02260 0.23 +0.3 427,302 + MMJJ_RS02260 0.23 +0.2 427,362 - MMJJ_RS02260 0.34 -0.1 427,362 - MMJJ_RS02260 0.34 +0.3 427,363 + MMJJ_RS02260 0.34 -0.0 427,363 + MMJJ_RS02260 0.34 +0.1 427,363 + MMJJ_RS02260 0.34 +0.1 427,363 + MMJJ_RS02260 0.34 +0.4 427,371 + MMJJ_RS02260 0.35 +0.1 427,371 + MMJJ_RS02260 0.35 -0.3 427,379 - MMJJ_RS02260 0.37 +0.6 427,380 + MMJJ_RS02260 0.37 -0.8 427,380 + MMJJ_RS02260 0.37 -0.9 427,383 + MMJJ_RS02260 0.38 +0.6 427,383 + MMJJ_RS02260 0.38 +0.1 427,383 + MMJJ_RS02260 0.38 -0.2 427,392 + MMJJ_RS02260 0.39 -0.1 427,392 + MMJJ_RS02260 0.39 +0.7 427,392 + MMJJ_RS02260 0.39 +0.7 427,436 - MMJJ_RS02260 0.47 -0.7 427,488 + MMJJ_RS02260 0.56 -0.0 427,622 - MMJJ_RS02260 0.79 +0.1 427,625 - MMJJ_RS02260 0.80 -0.5 427,626 + MMJJ_RS02260 0.80 -0.5 427,643 - MMJJ_RS02260 0.83 +0.1 427,644 + MMJJ_RS02260 0.83 -0.6 427,673 - MMJJ_RS02260 0.88 +0.2 427,673 - MMJJ_RS02260 0.88 +0.3 427,716 - +0.7 427,723 - +3.0 427,724 + +0.3 427,738 - +0.5 427,739 + -0.9 427,739 + +0.0 427,755 + -0.0 427,763 - +0.4 427,763 - +0.1 427,768 - -0.2 427,769 + +0.2 427,769 + -0.2 427,839 - -0.4 427,889 - -0.3 427,910 - -0.2
Or see this region's nucleotide sequence