Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36560 and BPHYT_RS36565 overlap by 4 nucleotides BPHYT_RS36565 and BPHYT_RS36570 are separated by 203 nucleotides BPHYT_RS36570 and BPHYT_RS36575 are separated by 271 nucleotides BPHYT_RS36575 and BPHYT_RS36580 are separated by 46 nucleotides
BPHYT_RS36560: BPHYT_RS36560 - hypothetical protein, at 115,707 to 115,979
_RS36560
BPHYT_RS36565: BPHYT_RS36565 - hypothetical protein, at 115,976 to 116,476
_RS36565
BPHYT_RS36570: BPHYT_RS36570 - histone, at 116,680 to 116,970
_RS36570
BPHYT_RS36575: BPHYT_RS36575 - hypothetical protein, at 117,242 to 117,781
_RS36575
BPHYT_RS36580: BPHYT_RS36580 - hypothetical protein, at 117,828 to 118,277
_RS36580
Position (kb)
116
117 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 115.689 kb on + strand at 115.689 kb on + strand at 115.690 kb on - strand at 115.690 kb on - strand at 115.693 kb on + strand at 115.694 kb on - strand at 115.694 kb on - strand at 115.740 kb on + strand, within BPHYT_RS36560 at 115.796 kb on + strand, within BPHYT_RS36560 at 115.824 kb on - strand, within BPHYT_RS36560 at 116.025 kb on + strand at 116.026 kb on - strand, within BPHYT_RS36565 at 116.186 kb on + strand, within BPHYT_RS36565 at 116.186 kb on + strand, within BPHYT_RS36565 at 116.186 kb on + strand, within BPHYT_RS36565 at 116.187 kb on - strand, within BPHYT_RS36565 at 116.187 kb on - strand, within BPHYT_RS36565 at 116.252 kb on + strand, within BPHYT_RS36565 at 116.252 kb on + strand, within BPHYT_RS36565 at 116.252 kb on + strand, within BPHYT_RS36565 at 116.253 kb on - strand, within BPHYT_RS36565 at 116.253 kb on - strand, within BPHYT_RS36565 at 116.253 kb on - strand, within BPHYT_RS36565 at 116.253 kb on - strand, within BPHYT_RS36565 at 116.276 kb on + strand, within BPHYT_RS36565 at 116.276 kb on + strand, within BPHYT_RS36565 at 116.276 kb on + strand, within BPHYT_RS36565 at 116.294 kb on + strand, within BPHYT_RS36565 at 116.294 kb on + strand, within BPHYT_RS36565 at 116.294 kb on + strand, within BPHYT_RS36565 at 116.294 kb on + strand, within BPHYT_RS36565 at 116.294 kb on + strand, within BPHYT_RS36565 at 116.295 kb on - strand, within BPHYT_RS36565 at 116.389 kb on + strand, within BPHYT_RS36565 at 116.462 kb on - strand at 116.462 kb on - strand at 116.701 kb on + strand at 116.810 kb on - strand, within BPHYT_RS36570 at 117.779 kb on + strand at 117.786 kb on - strand at 117.892 kb on + strand, within BPHYT_RS36580 at 117.898 kb on - strand, within BPHYT_RS36580 at 117.898 kb on - strand, within BPHYT_RS36580 at 117.949 kb on + strand, within BPHYT_RS36580 at 117.950 kb on - strand, within BPHYT_RS36580
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 115,689 + +0.3 115,689 + -0.3 115,690 - -0.1 115,690 - +0.3 115,693 + +0.2 115,694 - +0.2 115,694 - +0.7 115,740 + BPHYT_RS36560 0.12 -0.3 115,796 + BPHYT_RS36560 0.33 -0.4 115,824 - BPHYT_RS36560 0.43 -0.2 116,025 + +0.2 116,026 - BPHYT_RS36565 0.10 -0.2 116,186 + BPHYT_RS36565 0.42 -0.6 116,186 + BPHYT_RS36565 0.42 +0.2 116,186 + BPHYT_RS36565 0.42 +0.4 116,187 - BPHYT_RS36565 0.42 +0.0 116,187 - BPHYT_RS36565 0.42 -1.1 116,252 + BPHYT_RS36565 0.55 -0.3 116,252 + BPHYT_RS36565 0.55 -0.0 116,252 + BPHYT_RS36565 0.55 +0.1 116,253 - BPHYT_RS36565 0.55 -0.7 116,253 - BPHYT_RS36565 0.55 -2.6 116,253 - BPHYT_RS36565 0.55 +1.0 116,253 - BPHYT_RS36565 0.55 -0.4 116,276 + BPHYT_RS36565 0.60 +0.2 116,276 + BPHYT_RS36565 0.60 +0.1 116,276 + BPHYT_RS36565 0.60 -1.0 116,294 + BPHYT_RS36565 0.63 +0.3 116,294 + BPHYT_RS36565 0.63 +1.2 116,294 + BPHYT_RS36565 0.63 -0.1 116,294 + BPHYT_RS36565 0.63 +0.2 116,294 + BPHYT_RS36565 0.63 -0.4 116,295 - BPHYT_RS36565 0.64 +0.5 116,389 + BPHYT_RS36565 0.82 -0.3 116,462 - +0.6 116,462 - +0.1 116,701 + +0.4 116,810 - BPHYT_RS36570 0.45 -0.8 117,779 + +1.8 117,786 - -0.0 117,892 + BPHYT_RS36580 0.14 -0.8 117,898 - BPHYT_RS36580 0.16 +0.6 117,898 - BPHYT_RS36580 0.16 +0.2 117,949 + BPHYT_RS36580 0.27 +0.2 117,950 - BPHYT_RS36580 0.27 +0.3
Or see this region's nucleotide sequence