Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35760 and BPHYT_RS35765 are separated by 62 nucleotides BPHYT_RS35765 and BPHYT_RS35770 are separated by 103 nucleotides BPHYT_RS35770 and BPHYT_RS35775 overlap by 4 nucleotides
BPHYT_RS35760: BPHYT_RS35760 - ABC transporter substrate-binding protein, at 3,612,132 to 3,613,157
_RS35760
BPHYT_RS35765: BPHYT_RS35765 - ABC transporter permease, at 3,613,220 to 3,615,106
_RS35765
BPHYT_RS35770: BPHYT_RS35770 - glyoxalase, at 3,615,210 to 3,615,749
_RS35770
BPHYT_RS35775: BPHYT_RS35775 - ribulose bisphosphate carboxylase, at 3,615,746 to 3,617,044
_RS35775
Position (kb)
3613
3614
3615
3616 Strain fitness (log2 ratio)
-1
0
1 at 3612.349 kb on + strand, within BPHYT_RS35760 at 3612.349 kb on + strand, within BPHYT_RS35760 at 3612.540 kb on + strand, within BPHYT_RS35760 at 3612.698 kb on + strand, within BPHYT_RS35760 at 3612.771 kb on - strand, within BPHYT_RS35760 at 3612.822 kb on + strand, within BPHYT_RS35760 at 3612.838 kb on - strand, within BPHYT_RS35760 at 3613.084 kb on - strand at 3613.084 kb on - strand at 3613.169 kb on - strand at 3613.395 kb on - strand at 3613.610 kb on + strand, within BPHYT_RS35765 at 3613.616 kb on + strand, within BPHYT_RS35765 at 3613.617 kb on - strand, within BPHYT_RS35765 at 3613.786 kb on - strand, within BPHYT_RS35765 at 3613.952 kb on - strand, within BPHYT_RS35765 at 3614.580 kb on - strand, within BPHYT_RS35765 at 3614.681 kb on - strand, within BPHYT_RS35765 at 3615.375 kb on - strand, within BPHYT_RS35770 at 3615.682 kb on - strand, within BPHYT_RS35770
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,612,349 + BPHYT_RS35760 0.21 -0.3 3,612,349 + BPHYT_RS35760 0.21 -0.0 3,612,540 + BPHYT_RS35760 0.40 +0.6 3,612,698 + BPHYT_RS35760 0.55 +0.2 3,612,771 - BPHYT_RS35760 0.62 -0.2 3,612,822 + BPHYT_RS35760 0.67 -0.4 3,612,838 - BPHYT_RS35760 0.69 +0.1 3,613,084 - +0.7 3,613,084 - +0.6 3,613,169 - +0.4 3,613,395 - +1.3 3,613,610 + BPHYT_RS35765 0.21 -0.7 3,613,616 + BPHYT_RS35765 0.21 -0.2 3,613,617 - BPHYT_RS35765 0.21 -0.6 3,613,786 - BPHYT_RS35765 0.30 -0.3 3,613,952 - BPHYT_RS35765 0.39 -0.5 3,614,580 - BPHYT_RS35765 0.72 +0.3 3,614,681 - BPHYT_RS35765 0.77 -1.0 3,615,375 - BPHYT_RS35770 0.31 +1.3 3,615,682 - BPHYT_RS35770 0.87 -0.8
Or see this region's nucleotide sequence