Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35255

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35250 and BPHYT_RS35255 are separated by 149 nucleotidesBPHYT_RS35255 and BPHYT_RS35260 are separated by 175 nucleotides BPHYT_RS35250: BPHYT_RS35250 - alcohol dehydrogenase, at 3,510,317 to 3,511,282 _RS35250 BPHYT_RS35255: BPHYT_RS35255 - AraC family transcriptional regulator, at 3,511,432 to 3,512,262 _RS35255 BPHYT_RS35260: BPHYT_RS35260 - transporter, at 3,512,438 to 3,513,382 _RS35260 Position (kb) 3511 3512 3513Strain fitness (log2 ratio) -1 0 1at 3510.717 kb on + strand, within BPHYT_RS35250at 3511.869 kb on - strand, within BPHYT_RS35255at 3511.883 kb on + strand, within BPHYT_RS35255at 3511.995 kb on + strand, within BPHYT_RS35255at 3512.181 kb on + strandat 3512.199 kb on - strandat 3512.399 kb on + strandat 3512.400 kb on - strandat 3512.419 kb on + strandat 3512.492 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,510,717 + BPHYT_RS35250 0.41 +0.1
3,511,869 - BPHYT_RS35255 0.53 -1.1
3,511,883 + BPHYT_RS35255 0.54 -0.1
3,511,995 + BPHYT_RS35255 0.68 -0.6
3,512,181 + +0.1
3,512,199 - -0.6
3,512,399 + -1.5
3,512,400 - +0.1
3,512,419 + +1.0
3,512,492 + -0.2

Or see this region's nucleotide sequence