Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34810 and BPHYT_RS34815 are separated by 213 nucleotides BPHYT_RS34815 and BPHYT_RS34820 are separated by 124 nucleotides
BPHYT_RS34810: BPHYT_RS34810 - RND transporter, at 3,413,637 to 3,416,252
_RS34810
BPHYT_RS34815: BPHYT_RS34815 - ABC transporter, at 3,416,466 to 3,417,071
_RS34815
BPHYT_RS34820: BPHYT_RS34820 - radical SAM protein, at 3,417,196 to 3,418,350
_RS34820
Position (kb)
3416
3417
3418 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3416.141 kb on + strand at 3416.142 kb on - strand at 3416.143 kb on + strand at 3416.143 kb on + strand at 3416.144 kb on - strand at 3416.152 kb on + strand at 3416.219 kb on - strand at 3416.237 kb on + strand at 3416.237 kb on + strand at 3416.237 kb on + strand at 3416.237 kb on + strand at 3416.237 kb on + strand at 3416.238 kb on - strand at 3416.254 kb on + strand at 3416.254 kb on + strand at 3416.255 kb on - strand at 3416.255 kb on - strand at 3416.305 kb on + strand at 3416.305 kb on + strand at 3416.306 kb on - strand at 3416.393 kb on - strand at 3416.400 kb on + strand at 3416.466 kb on - strand at 3416.466 kb on - strand at 3416.736 kb on + strand, within BPHYT_RS34815 at 3416.770 kb on - strand, within BPHYT_RS34815 at 3416.807 kb on - strand, within BPHYT_RS34815 at 3416.979 kb on + strand, within BPHYT_RS34815
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,416,141 + -0.5 3,416,142 - -0.6 3,416,143 + -0.8 3,416,143 + -0.1 3,416,144 - -1.1 3,416,152 + +1.8 3,416,219 - -2.3 3,416,237 + -0.4 3,416,237 + -1.6 3,416,237 + +0.8 3,416,237 + -2.9 3,416,237 + -0.6 3,416,238 - -0.6 3,416,254 + -0.5 3,416,254 + -0.4 3,416,255 - -0.6 3,416,255 - +0.1 3,416,305 + -0.1 3,416,305 + -1.0 3,416,306 - -0.5 3,416,393 - -0.0 3,416,400 + -0.3 3,416,466 - -0.9 3,416,466 - +0.4 3,416,736 + BPHYT_RS34815 0.45 -1.2 3,416,770 - BPHYT_RS34815 0.50 -1.5 3,416,807 - BPHYT_RS34815 0.56 -1.0 3,416,979 + BPHYT_RS34815 0.85 -1.3
Or see this region's nucleotide sequence