Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34195

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,274,513	+		BPHYT_RS34190	0.57	-0.2
3,274,513	+		BPHYT_RS34190	0.57	-0.1
3,274,513	+		BPHYT_RS34190	0.57	-0.9
3,274,603	-		BPHYT_RS34190	0.62	+0.3
3,274,730	-		BPHYT_RS34190	0.70	-0.2
3,274,730	-		BPHYT_RS34190	0.70	-0.4
3,274,746	+		BPHYT_RS34190	0.71	-0.1
3,275,175	-				+0.1
3,275,225	+				-0.6
3,275,225	+				+0.1
3,275,253	-				-0.4
3,275,253	-				+0.0
3,275,271	+				+0.9
3,275,417	-				+0.2
3,275,417	-				+0.8
3,275,417	-				-1.3
3,275,549	+		BPHYT_RS34195	0.14	-0.4
3,275,550	-		BPHYT_RS34195	0.14	+0.4
3,275,656	+		BPHYT_RS34195	0.39	-0.2
3,275,657	-		BPHYT_RS34195	0.39	-0.2
3,275,657	-		BPHYT_RS34195	0.39	-0.5
3,275,657	-		BPHYT_RS34195	0.39	+0.1
3,275,725	+		BPHYT_RS34195	0.54	+0.5
3,275,726	-		BPHYT_RS34195	0.55	-0.4
3,275,788	+		BPHYT_RS34195	0.69	+0.1
3,275,827	+		BPHYT_RS34195	0.78	-0.4
3,275,827	+		BPHYT_RS34195	0.78	-0.5
3,275,828	-		BPHYT_RS34195	0.78	+0.5
3,276,183	+		BPHYT_RS34200	0.46	+0.8
3,276,286	+		BPHYT_RS34200	0.80	+0.6
3,276,286	+		BPHYT_RS34200	0.80	+0.2
3,276,287	-		BPHYT_RS34200	0.81	-0.6
3,276,287	-		BPHYT_RS34200	0.81	-0.1
3,276,289	+		BPHYT_RS34200	0.81	+0.0
3,276,290	-		BPHYT_RS34200	0.82	-2.2
3,276,290	-		BPHYT_RS34200	0.82	-0.2
3,276,290	-		BPHYT_RS34200	0.82	+0.4
3,276,290	-		BPHYT_RS34200	0.82	+1.1
3,276,388	+				-0.4
3,276,388	+				-0.2
3,276,388	+				-0.3
3,276,389	-				+2.1
3,276,452	+				-0.2
3,276,452	+				+2.8
3,276,453	-				-0.2
3,276,453	-				-0.6
3,276,713	-		BPHYT_RS34205	0.23	+0.2
3,276,713	-		BPHYT_RS34205	0.23	+0.3