Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30340 and BPHYT_RS30345 are separated by 20 nucleotides BPHYT_RS30345 and BPHYT_RS30350 are separated by 222 nucleotides BPHYT_RS30350 and BPHYT_RS30355 are separated by 142 nucleotides
BPHYT_RS30340: BPHYT_RS30340 - AraC family transcriptional regulator, at 2,361,239 to 2,362,093
_RS30340
BPHYT_RS30345: BPHYT_RS30345 - alanyl-tRNA synthetase, at 2,362,114 to 2,362,827
_RS30345
BPHYT_RS30350: BPHYT_RS30350 - LysR family transcriptional regulator, at 2,363,050 to 2,363,970
_RS30350
BPHYT_RS30355: BPHYT_RS30355 - transcriptional regulator, at 2,364,113 to 2,367,013
_RS30355
Position (kb)
2363
2364 Strain fitness (log2 ratio)
-1
0
1 at 2362.079 kb on - strand at 2362.347 kb on - strand, within BPHYT_RS30345 at 2362.506 kb on - strand, within BPHYT_RS30345 at 2362.536 kb on + strand, within BPHYT_RS30345 at 2362.857 kb on - strand at 2362.984 kb on - strand at 2363.226 kb on - strand, within BPHYT_RS30350 at 2363.395 kb on + strand, within BPHYT_RS30350 at 2363.396 kb on - strand, within BPHYT_RS30350 at 2363.857 kb on + strand, within BPHYT_RS30350 at 2364.092 kb on - strand at 2364.116 kb on + strand at 2364.117 kb on - strand at 2364.124 kb on + strand at 2364.182 kb on - strand at 2364.358 kb on - strand at 2364.405 kb on + strand, within BPHYT_RS30355 at 2364.502 kb on - strand, within BPHYT_RS30355 at 2364.760 kb on - strand, within BPHYT_RS30355 at 2364.760 kb on - strand, within BPHYT_RS30355
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,362,079 - -1.4 2,362,347 - BPHYT_RS30345 0.33 +0.0 2,362,506 - BPHYT_RS30345 0.55 -0.0 2,362,536 + BPHYT_RS30345 0.59 -0.0 2,362,857 - +0.3 2,362,984 - -1.7 2,363,226 - BPHYT_RS30350 0.19 -1.7 2,363,395 + BPHYT_RS30350 0.37 +0.7 2,363,396 - BPHYT_RS30350 0.38 -1.5 2,363,857 + BPHYT_RS30350 0.88 -0.3 2,364,092 - +0.5 2,364,116 + +0.2 2,364,117 - +0.1 2,364,124 + -1.3 2,364,182 - +0.1 2,364,358 - -0.2 2,364,405 + BPHYT_RS30355 0.10 +0.0 2,364,502 - BPHYT_RS30355 0.13 +0.7 2,364,760 - BPHYT_RS30355 0.22 +0.4 2,364,760 - BPHYT_RS30355 0.22 +0.1
Or see this region's nucleotide sequence