Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28925 and BPHYT_RS28930 overlap by 4 nucleotides BPHYT_RS28930 and BPHYT_RS28935 overlap by 4 nucleotides
BPHYT_RS28925: BPHYT_RS28925 - hypothetical protein, at 2,038,850 to 2,039,749
_RS28925
BPHYT_RS28930: BPHYT_RS28930 - chromosome partitioning protein ParA, at 2,039,746 to 2,040,534
_RS28930
BPHYT_RS28935: BPHYT_RS28935 - cellulose synthase, at 2,040,531 to 2,042,735
_RS28935
Position (kb)
2039
2040
2041 Strain fitness (log2 ratio)
-1
0
1 at 2038.809 kb on - strand at 2038.809 kb on - strand at 2038.969 kb on - strand, within BPHYT_RS28925 at 2040.140 kb on - strand, within BPHYT_RS28930 at 2040.536 kb on + strand at 2040.661 kb on - strand at 2040.690 kb on + strand at 2040.691 kb on - strand at 2040.807 kb on + strand, within BPHYT_RS28935 at 2040.808 kb on - strand at 2040.809 kb on + strand, within BPHYT_RS28935 at 2040.809 kb on + strand, within BPHYT_RS28935 at 2040.810 kb on - strand, within BPHYT_RS28935 at 2040.810 kb on - strand, within BPHYT_RS28935 at 2040.810 kb on - strand, within BPHYT_RS28935 at 2040.813 kb on + strand, within BPHYT_RS28935 at 2040.894 kb on + strand, within BPHYT_RS28935 at 2040.922 kb on - strand, within BPHYT_RS28935 at 2041.015 kb on - strand, within BPHYT_RS28935 at 2041.050 kb on + strand, within BPHYT_RS28935 at 2041.051 kb on - strand, within BPHYT_RS28935 at 2041.099 kb on + strand, within BPHYT_RS28935 at 2041.233 kb on + strand, within BPHYT_RS28935 at 2041.234 kb on - strand, within BPHYT_RS28935
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,038,809 - +0.1 2,038,809 - -1.0 2,038,969 - BPHYT_RS28925 0.13 +0.6 2,040,140 - BPHYT_RS28930 0.50 -0.7 2,040,536 + +0.1 2,040,661 - +0.1 2,040,690 + -1.3 2,040,691 - +0.0 2,040,807 + BPHYT_RS28935 0.13 -0.2 2,040,808 - +1.7 2,040,809 + BPHYT_RS28935 0.13 -0.2 2,040,809 + BPHYT_RS28935 0.13 +0.7 2,040,810 - BPHYT_RS28935 0.13 -0.2 2,040,810 - BPHYT_RS28935 0.13 -0.5 2,040,810 - BPHYT_RS28935 0.13 +0.4 2,040,813 + BPHYT_RS28935 0.13 -1.6 2,040,894 + BPHYT_RS28935 0.16 +0.3 2,040,922 - BPHYT_RS28935 0.18 -0.7 2,041,015 - BPHYT_RS28935 0.22 +0.5 2,041,050 + BPHYT_RS28935 0.24 +1.0 2,041,051 - BPHYT_RS28935 0.24 +0.5 2,041,099 + BPHYT_RS28935 0.26 +0.0 2,041,233 + BPHYT_RS28935 0.32 +0.2 2,041,234 - BPHYT_RS28935 0.32 +0.0
Or see this region's nucleotide sequence