Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23820 and BPHYT_RS23825 are separated by 170 nucleotides BPHYT_RS23825 and BPHYT_RS23830 are separated by 190 nucleotides BPHYT_RS23830 and BPHYT_RS23835 are separated by 73 nucleotides BPHYT_RS23835 and BPHYT_RS23840 are separated by 161 nucleotides
BPHYT_RS23820: BPHYT_RS23820 - fusaric acid resistance protein, at 911,164 to 913,332
_RS23820
BPHYT_RS23825: BPHYT_RS23825 - hypothetical protein, at 913,503 to 913,718
_RS23825
BPHYT_RS23830: BPHYT_RS23830 - acetyl-CoA hydrolase, at 913,909 to 915,423
_RS23830
BPHYT_RS23835: BPHYT_RS23835 - membrane protein, at 915,497 to 915,751
_RS23835
BPHYT_RS23840: BPHYT_RS23840 - methyltransferase, at 915,913 to 916,620
_RS23840
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 913.373 kb on - strand at 913.430 kb on - strand at 913.431 kb on + strand at 913.432 kb on - strand at 913.486 kb on - strand at 913.607 kb on + strand, within BPHYT_RS23825 at 913.649 kb on + strand, within BPHYT_RS23825 at 913.650 kb on - strand, within BPHYT_RS23825 at 913.704 kb on + strand at 913.736 kb on - strand at 913.745 kb on - strand at 913.745 kb on - strand at 913.745 kb on - strand at 913.890 kb on + strand at 913.912 kb on + strand at 914.301 kb on + strand, within BPHYT_RS23830 at 914.658 kb on - strand, within BPHYT_RS23830 at 915.001 kb on + strand, within BPHYT_RS23830 at 915.369 kb on + strand at 915.477 kb on + strand at 915.799 kb on + strand at 915.851 kb on + strand at 915.852 kb on - strand at 916.042 kb on - strand at 916.081 kb on - strand, within BPHYT_RS23840 at 916.081 kb on - strand at 916.112 kb on + strand, within BPHYT_RS23840 at 916.112 kb on + strand, within BPHYT_RS23840 at 916.113 kb on - strand, within BPHYT_RS23840 at 916.181 kb on + strand, within BPHYT_RS23840
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 913,373 - +0.3 913,430 - -0.5 913,431 + -0.3 913,432 - -0.1 913,486 - +0.4 913,607 + BPHYT_RS23825 0.48 -0.1 913,649 + BPHYT_RS23825 0.68 +0.1 913,650 - BPHYT_RS23825 0.68 -0.5 913,704 + -0.1 913,736 - -0.6 913,745 - +0.5 913,745 - +0.2 913,745 - +0.2 913,890 + +0.2 913,912 + +0.7 914,301 + BPHYT_RS23830 0.26 +1.0 914,658 - BPHYT_RS23830 0.49 +1.5 915,001 + BPHYT_RS23830 0.72 +0.2 915,369 + -0.1 915,477 + -0.9 915,799 + +0.6 915,851 + +0.4 915,852 - +0.1 916,042 - -1.3 916,081 - BPHYT_RS23840 0.24 -3.4 916,081 - -0.9 916,112 + BPHYT_RS23840 0.28 -0.4 916,112 + BPHYT_RS23840 0.28 -4.9 916,113 - BPHYT_RS23840 0.28 -0.9 916,181 + BPHYT_RS23840 0.38 -4.1
Or see this region's nucleotide sequence