Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21660 and BPHYT_RS21665 are separated by 12 nucleotides BPHYT_RS21665 and BPHYT_RS21670 are separated by 283 nucleotides BPHYT_RS21670 and BPHYT_RS21675 are separated by 49 nucleotides
BPHYT_RS21660: BPHYT_RS21660 - sodium:solute symporter, at 414,298 to 415,683
_RS21660
BPHYT_RS21665: BPHYT_RS21665 - hypothetical protein, at 415,696 to 415,905
_RS21665
BPHYT_RS21670: BPHYT_RS21670 - transcriptional regulator, at 416,189 to 416,599
_RS21670
BPHYT_RS21675: BPHYT_RS21675 - FAD-dependent oxidoreductase, at 416,649 to 418,028
_RS21675
Position (kb) 415
416 Strain fitness (log2 ratio) -1
0
1 at 414.867 kb on - strand, within BPHYT_RS21660 at 415.143 kb on + strand, within BPHYT_RS21660 at 415.179 kb on - strand, within BPHYT_RS21660 at 415.449 kb on - strand, within BPHYT_RS21660 at 415.487 kb on + strand, within BPHYT_RS21660 at 415.698 kb on - strand at 415.800 kb on - strand, within BPHYT_RS21665 at 415.872 kb on - strand, within BPHYT_RS21665 at 415.968 kb on - strand at 416.166 kb on + strand at 416.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 414,867 - BPHYT_RS21660 0.41 -0.1 415,143 + BPHYT_RS21660 0.61 +1.6 415,179 - BPHYT_RS21660 0.64 +0.5 415,449 - BPHYT_RS21660 0.83 -0.4 415,487 + BPHYT_RS21660 0.86 +0.1 415,698 - +0.5 415,800 - BPHYT_RS21665 0.50 -1.2 415,872 - BPHYT_RS21665 0.84 -0.2 415,968 - +0.4 416,166 + -0.6 416,746 - -0.3
Or see this region's nucleotide sequence