Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21505

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21495 and BPHYT_RS21500 overlap by 4 nucleotidesBPHYT_RS21500 and BPHYT_RS21505 are separated by 78 nucleotidesBPHYT_RS21505 and BPHYT_RS21510 are separated by 31 nucleotidesBPHYT_RS21510 and BPHYT_RS21515 overlap by 4 nucleotides BPHYT_RS21495: BPHYT_RS21495 - ABC transporter, at 382,634 to 383,443 _RS21495 BPHYT_RS21500: BPHYT_RS21500 - ABC transporter, at 383,440 to 384,153 _RS21500 BPHYT_RS21505: BPHYT_RS21505 - amidohydrolase, at 384,232 to 385,431 _RS21505 BPHYT_RS21510: BPHYT_RS21510 - (2Fe-2S)-binding protein, at 385,463 to 385,981 _RS21510 BPHYT_RS21515: BPHYT_RS21515 - aldehyde dehydrogenase, at 385,978 to 389,601 _RS21515 Position (kb) 384 385 386Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 383.496 kb on + strandat 384.061 kb on + strand, within BPHYT_RS21500at 384.827 kb on - strand, within BPHYT_RS21505at 384.945 kb on + strand, within BPHYT_RS21505at 385.099 kb on - strand, within BPHYT_RS21505at 385.433 kb on + strandat 385.772 kb on + strand, within BPHYT_RS21510at 386.038 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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383,496 + +0.2
384,061 + BPHYT_RS21500 0.87 -1.2
384,827 - BPHYT_RS21505 0.50 -1.8
384,945 + BPHYT_RS21505 0.59 -3.9
385,099 - BPHYT_RS21505 0.72 -0.6
385,433 + +0.0
385,772 + BPHYT_RS21510 0.60 -0.0
386,038 + +0.2

Or see this region's nucleotide sequence