Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20830

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20820 and BPHYT_RS20825 are separated by 53 nucleotidesBPHYT_RS20825 and BPHYT_RS20830 are separated by 14 nucleotidesBPHYT_RS20830 and BPHYT_RS20835 are separated by 155 nucleotides BPHYT_RS20820: BPHYT_RS20820 - ABC transporter permease, at 234,075 to 235,034 _RS20820 BPHYT_RS20825: BPHYT_RS20825 - electron transfer flavoprotein subunit beta, at 235,088 to 235,837 _RS20825 BPHYT_RS20830: BPHYT_RS20830 - electron transfer flavoprotein subunit beta, at 235,852 to 236,784 _RS20830 BPHYT_RS20835: BPHYT_RS20835 - pyridoxal 4-dehydrogenase, at 236,940 to 237,956 _RS20835 Position (kb) 235 236 237Strain fitness (log2 ratio) -2 -1 0 1at 236.101 kb on + strand, within BPHYT_RS20830at 236.479 kb on + strand, within BPHYT_RS20830at 236.614 kb on + strand, within BPHYT_RS20830at 236.862 kb on + strandat 236.961 kb on - strandat 237.023 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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236,101 + BPHYT_RS20830 0.27 -1.1
236,479 + BPHYT_RS20830 0.67 +0.2
236,614 + BPHYT_RS20830 0.82 -2.0
236,862 + -0.8
236,961 - -1.3
237,023 + -0.6

Or see this region's nucleotide sequence