Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18675 and BPHYT_RS18680 are separated by 0 nucleotides BPHYT_RS18680 and BPHYT_RS18685 are separated by 6 nucleotides
BPHYT_RS18675: BPHYT_RS18675 - peptide ABC transporter ATP-binding protein, at 4,198,649 to 4,199,653
_RS18675
BPHYT_RS18680: BPHYT_RS18680 - peptide ABC transporter, at 4,199,654 to 4,200,571
_RS18680
BPHYT_RS18685: BPHYT_RS18685 - peptide ABC transporter permease, at 4,200,578 to 4,201,588
_RS18685
Position (kb) 4199
4200
4201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4198.725 kb on - strand at 4198.788 kb on + strand, within BPHYT_RS18675 at 4198.789 kb on - strand, within BPHYT_RS18675 at 4198.789 kb on - strand, within BPHYT_RS18675 at 4198.789 kb on - strand, within BPHYT_RS18675 at 4198.917 kb on + strand, within BPHYT_RS18675 at 4198.917 kb on + strand, within BPHYT_RS18675 at 4198.980 kb on + strand, within BPHYT_RS18675 at 4198.981 kb on - strand, within BPHYT_RS18675 at 4198.981 kb on - strand, within BPHYT_RS18675 at 4199.346 kb on + strand, within BPHYT_RS18675 at 4199.642 kb on + strand at 4199.643 kb on - strand at 4199.647 kb on + strand at 4199.647 kb on + strand at 4199.648 kb on - strand at 4199.655 kb on + strand at 4199.655 kb on + strand at 4199.655 kb on + strand at 4199.656 kb on - strand at 4199.656 kb on - strand at 4199.781 kb on + strand, within BPHYT_RS18680 at 4199.782 kb on - strand, within BPHYT_RS18680 at 4199.988 kb on + strand, within BPHYT_RS18680 at 4200.036 kb on + strand, within BPHYT_RS18680 at 4200.037 kb on - strand, within BPHYT_RS18680 at 4200.037 kb on - strand, within BPHYT_RS18680 at 4200.037 kb on - strand, within BPHYT_RS18680 at 4200.037 kb on - strand, within BPHYT_RS18680 at 4200.037 kb on - strand, within BPHYT_RS18680 at 4200.074 kb on - strand, within BPHYT_RS18680 at 4200.277 kb on - strand, within BPHYT_RS18680 at 4200.586 kb on + strand at 4200.587 kb on - strand at 4200.615 kb on + strand at 4200.615 kb on + strand at 4200.891 kb on + strand, within BPHYT_RS18685 at 4200.892 kb on - strand, within BPHYT_RS18685 at 4200.892 kb on - strand, within BPHYT_RS18685 at 4200.892 kb on - strand, within BPHYT_RS18685 at 4201.071 kb on + strand, within BPHYT_RS18685 at 4201.072 kb on - strand, within BPHYT_RS18685 at 4201.167 kb on + strand, within BPHYT_RS18685 at 4201.383 kb on + strand, within BPHYT_RS18685 at 4201.384 kb on - strand, within BPHYT_RS18685 at 4201.384 kb on - strand, within BPHYT_RS18685 at 4201.384 kb on - strand, within BPHYT_RS18685
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,198,725 - +1.5 4,198,788 + BPHYT_RS18675 0.14 -0.3 4,198,789 - BPHYT_RS18675 0.14 +0.5 4,198,789 - BPHYT_RS18675 0.14 -0.7 4,198,789 - BPHYT_RS18675 0.14 +0.2 4,198,917 + BPHYT_RS18675 0.27 +0.2 4,198,917 + BPHYT_RS18675 0.27 -0.2 4,198,980 + BPHYT_RS18675 0.33 -0.5 4,198,981 - BPHYT_RS18675 0.33 +1.3 4,198,981 - BPHYT_RS18675 0.33 -0.1 4,199,346 + BPHYT_RS18675 0.69 -0.3 4,199,642 + +0.8 4,199,643 - -0.1 4,199,647 + -1.2 4,199,647 + +0.4 4,199,648 - +0.5 4,199,655 + +0.4 4,199,655 + -0.8 4,199,655 + +0.3 4,199,656 - +0.7 4,199,656 - -0.4 4,199,781 + BPHYT_RS18680 0.14 +0.1 4,199,782 - BPHYT_RS18680 0.14 +0.4 4,199,988 + BPHYT_RS18680 0.36 +0.4 4,200,036 + BPHYT_RS18680 0.42 -0.1 4,200,037 - BPHYT_RS18680 0.42 +0.0 4,200,037 - BPHYT_RS18680 0.42 +0.2 4,200,037 - BPHYT_RS18680 0.42 +0.4 4,200,037 - BPHYT_RS18680 0.42 -0.2 4,200,037 - BPHYT_RS18680 0.42 +0.3 4,200,074 - BPHYT_RS18680 0.46 -1.2 4,200,277 - BPHYT_RS18680 0.68 +0.2 4,200,586 + +0.0 4,200,587 - +2.3 4,200,615 + +1.2 4,200,615 + -2.2 4,200,891 + BPHYT_RS18685 0.31 +0.1 4,200,892 - BPHYT_RS18685 0.31 -1.6 4,200,892 - BPHYT_RS18685 0.31 -0.0 4,200,892 - BPHYT_RS18685 0.31 +0.2 4,201,071 + BPHYT_RS18685 0.49 +1.0 4,201,072 - BPHYT_RS18685 0.49 +0.5 4,201,167 + BPHYT_RS18685 0.58 -0.3 4,201,383 + BPHYT_RS18685 0.80 +0.0 4,201,384 - BPHYT_RS18685 0.80 -1.6 4,201,384 - BPHYT_RS18685 0.80 -0.2 4,201,384 - BPHYT_RS18685 0.80 +0.3
Or see this region's nucleotide sequence