Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17065 and BPHYT_RS17070 overlap by 4 nucleotides BPHYT_RS17070 and BPHYT_RS17075 are separated by 9 nucleotides BPHYT_RS17075 and BPHYT_RS17080 are separated by 81 nucleotides
BPHYT_RS17065: BPHYT_RS17065 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 3,869,854 to 3,870,450
_RS17065
BPHYT_RS17070: BPHYT_RS17070 - pyrimidine deaminase, at 3,870,447 to 3,870,770
_RS17070
BPHYT_RS17075: BPHYT_RS17075 - ABC transporter permease, at 3,870,780 to 3,871,709
_RS17075
BPHYT_RS17080: BPHYT_RS17080 - signal recognition particle protein, at 3,871,791 to 3,873,158
_RS17080
Position (kb)
3870
3871
3872 Strain fitness (log2 ratio)
-2
-1
0
1 at 3870.422 kb on + strand at 3870.760 kb on - strand at 3870.787 kb on - strand at 3870.833 kb on - strand at 3870.833 kb on - strand at 3871.020 kb on + strand, within BPHYT_RS17075 at 3871.020 kb on + strand, within BPHYT_RS17075 at 3871.021 kb on - strand, within BPHYT_RS17075 at 3871.403 kb on - strand, within BPHYT_RS17075 at 3871.403 kb on - strand, within BPHYT_RS17075 at 3871.484 kb on + strand, within BPHYT_RS17075 at 3871.694 kb on - strand at 3871.694 kb on - strand at 3871.698 kb on + strand at 3871.698 kb on + strand at 3871.698 kb on + strand at 3871.698 kb on + strand at 3871.699 kb on - strand at 3871.699 kb on - strand at 3871.720 kb on + strand at 3871.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,870,422 + -0.5 3,870,760 - +0.2 3,870,787 - +1.3 3,870,833 - -0.7 3,870,833 - -0.4 3,871,020 + BPHYT_RS17075 0.26 -1.9 3,871,020 + BPHYT_RS17075 0.26 -0.7 3,871,021 - BPHYT_RS17075 0.26 -0.8 3,871,403 - BPHYT_RS17075 0.67 +0.2 3,871,403 - BPHYT_RS17075 0.67 +0.3 3,871,484 + BPHYT_RS17075 0.76 -0.8 3,871,694 - +0.1 3,871,694 - -0.3 3,871,698 + +0.2 3,871,698 + -0.3 3,871,698 + -1.4 3,871,698 + -0.7 3,871,699 - -0.3 3,871,699 - +0.1 3,871,720 + -0.3 3,871,725 + +1.6
Or see this region's nucleotide sequence