Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16670 and BPHYT_RS16675 are separated by 12 nucleotides BPHYT_RS16675 and BPHYT_RS16680 are separated by 184 nucleotides
BPHYT_RS16670: BPHYT_RS16670 - hypothetical protein, at 3,774,694 to 3,775,521
_RS16670
BPHYT_RS16675: BPHYT_RS16675 - dihydroorotase, at 3,775,534 to 3,776,595
_RS16675
BPHYT_RS16680: BPHYT_RS16680 - glutamine amidotransferase, at 3,776,780 to 3,777,697
_RS16680
Position (kb)
3775
3776
3777 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3774.612 kb on + strand at 3774.893 kb on + strand, within BPHYT_RS16670 at 3774.914 kb on - strand, within BPHYT_RS16670 at 3775.114 kb on + strand, within BPHYT_RS16670 at 3775.281 kb on + strand, within BPHYT_RS16670 at 3775.281 kb on + strand, within BPHYT_RS16670 at 3775.282 kb on - strand, within BPHYT_RS16670 at 3775.282 kb on - strand, within BPHYT_RS16670 at 3775.293 kb on - strand, within BPHYT_RS16670 at 3775.365 kb on + strand, within BPHYT_RS16670 at 3775.365 kb on + strand, within BPHYT_RS16670 at 3775.407 kb on - strand, within BPHYT_RS16670 at 3775.536 kb on - strand at 3775.536 kb on - strand at 3775.920 kb on - strand, within BPHYT_RS16675 at 3776.027 kb on + strand, within BPHYT_RS16675 at 3776.184 kb on + strand, within BPHYT_RS16675 at 3776.633 kb on + strand at 3776.633 kb on + strand at 3776.633 kb on + strand at 3776.633 kb on + strand at 3776.634 kb on - strand at 3776.661 kb on + strand at 3776.706 kb on - strand at 3776.706 kb on - strand at 3776.706 kb on - strand at 3776.706 kb on - strand at 3776.706 kb on - strand at 3777.102 kb on - strand, within BPHYT_RS16680 at 3777.335 kb on + strand, within BPHYT_RS16680 at 3777.335 kb on + strand, within BPHYT_RS16680 at 3777.336 kb on - strand, within BPHYT_RS16680 at 3777.336 kb on - strand, within BPHYT_RS16680 at 3777.336 kb on - strand, within BPHYT_RS16680 at 3777.338 kb on + strand, within BPHYT_RS16680 at 3777.338 kb on + strand, within BPHYT_RS16680 at 3777.338 kb on + strand, within BPHYT_RS16680 at 3777.338 kb on + strand, within BPHYT_RS16680 at 3777.339 kb on - strand, within BPHYT_RS16680 at 3777.410 kb on + strand, within BPHYT_RS16680 at 3777.410 kb on + strand, within BPHYT_RS16680 at 3777.410 kb on + strand, within BPHYT_RS16680 at 3777.411 kb on - strand, within BPHYT_RS16680
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,774,612 + +0.4 3,774,893 + BPHYT_RS16670 0.24 +1.3 3,774,914 - BPHYT_RS16670 0.27 +0.3 3,775,114 + BPHYT_RS16670 0.51 +0.0 3,775,281 + BPHYT_RS16670 0.71 -0.3 3,775,281 + BPHYT_RS16670 0.71 +0.1 3,775,282 - BPHYT_RS16670 0.71 +0.2 3,775,282 - BPHYT_RS16670 0.71 -3.6 3,775,293 - BPHYT_RS16670 0.72 -0.2 3,775,365 + BPHYT_RS16670 0.81 -0.3 3,775,365 + BPHYT_RS16670 0.81 +0.6 3,775,407 - BPHYT_RS16670 0.86 -0.1 3,775,536 - -0.1 3,775,536 - +0.5 3,775,920 - BPHYT_RS16675 0.36 -1.3 3,776,027 + BPHYT_RS16675 0.46 -2.2 3,776,184 + BPHYT_RS16675 0.61 -0.7 3,776,633 + +1.2 3,776,633 + -1.7 3,776,633 + -0.7 3,776,633 + -0.4 3,776,634 - +1.7 3,776,661 + -0.5 3,776,706 - -0.1 3,776,706 - -0.3 3,776,706 - +1.3 3,776,706 - +0.2 3,776,706 - +0.4 3,777,102 - BPHYT_RS16680 0.35 +0.2 3,777,335 + BPHYT_RS16680 0.60 -0.1 3,777,335 + BPHYT_RS16680 0.60 +0.1 3,777,336 - BPHYT_RS16680 0.61 +0.3 3,777,336 - BPHYT_RS16680 0.61 +0.0 3,777,336 - BPHYT_RS16680 0.61 +0.1 3,777,338 + BPHYT_RS16680 0.61 +0.1 3,777,338 + BPHYT_RS16680 0.61 -0.2 3,777,338 + BPHYT_RS16680 0.61 +0.3 3,777,338 + BPHYT_RS16680 0.61 +0.3 3,777,339 - BPHYT_RS16680 0.61 +2.3 3,777,410 + BPHYT_RS16680 0.69 -0.7 3,777,410 + BPHYT_RS16680 0.69 +0.3 3,777,410 + BPHYT_RS16680 0.69 -0.1 3,777,411 - BPHYT_RS16680 0.69 +0.0
Or see this region's nucleotide sequence