Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09835

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09825 and BPHYT_RS09835 are separated by 342 nucleotidesBPHYT_RS09835 and BPHYT_RS09840 are separated by 705 nucleotides BPHYT_RS09825: BPHYT_RS09825 - Fe-S protein, at 2,232,076 to 2,232,951 _RS09825 BPHYT_RS09835: BPHYT_RS09835 - uroporphyrin-III C-methyltransferase, at 2,233,294 to 2,234,109 _RS09835 BPHYT_RS09840: BPHYT_RS09840 - nitrite reductase, at 2,234,815 to 2,237,355 _RS09840 Position (kb) 2233 2234 2235Strain fitness (log2 ratio) -1 0 1 2 3at 2232.487 kb on + strand, within BPHYT_RS09825at 2232.670 kb on + strand, within BPHYT_RS09825at 2233.052 kb on - strandat 2233.147 kb on - strandat 2233.211 kb on - strandat 2233.599 kb on + strand, within BPHYT_RS09835at 2234.119 kb on + strandat 2234.120 kb on - strandat 2234.307 kb on - strandat 2235.102 kb on - strand, within BPHYT_RS09840at 2235.107 kb on - strand, within BPHYT_RS09840

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,232,487 + BPHYT_RS09825 0.47 +0.7
2,232,670 + BPHYT_RS09825 0.68 -0.0
2,233,052 - -0.3
2,233,147 - +0.4
2,233,211 - +2.8
2,233,599 + BPHYT_RS09835 0.37 -0.3
2,234,119 + +0.4
2,234,120 - +0.1
2,234,307 - +0.7
2,235,102 - BPHYT_RS09840 0.11 +1.5
2,235,107 - BPHYT_RS09840 0.11 +1.3

Or see this region's nucleotide sequence