Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS09560 and BPHYT_RS09565 are separated by 88 nucleotides BPHYT_RS09565 and BPHYT_RS09570 are separated by 117 nucleotides BPHYT_RS09570 and BPHYT_RS09575 are separated by 70 nucleotides
BPHYT_RS09560: BPHYT_RS09560 - 3-hydroxyacyl-CoA dehydrogenase, at 2,169,035 to 2,171,119
_RS09560
BPHYT_RS09565: BPHYT_RS09565 - acetyl-CoA acetyltransferase, at 2,171,208 to 2,172,386
_RS09565
BPHYT_RS09570: BPHYT_RS09570 - Water stress and Hypersensitive response domain-containing protein, at 2,172,504 to 2,173,007
_RS09570
BPHYT_RS09575: BPHYT_RS09575 - hypothetical protein, at 2,173,078 to 2,173,452
_RS09575
Position (kb)
2171
2172
2173 Strain fitness (log2 ratio)
-1
0
1 at 2170.490 kb on + strand, within BPHYT_RS09560 at 2170.491 kb on - strand, within BPHYT_RS09560 at 2170.938 kb on - strand at 2170.965 kb on - strand at 2171.122 kb on + strand at 2171.123 kb on - strand at 2171.195 kb on + strand at 2172.098 kb on + strand, within BPHYT_RS09565 at 2172.181 kb on - strand, within BPHYT_RS09565 at 2172.959 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,170,490 + BPHYT_RS09560 0.70 +0.6 2,170,491 - BPHYT_RS09560 0.70 -0.1 2,170,938 - -0.3 2,170,965 - -0.0 2,171,122 + -0.4 2,171,123 - +0.5 2,171,195 + +0.3 2,172,098 + BPHYT_RS09565 0.75 -0.9 2,172,181 - BPHYT_RS09565 0.83 +0.1 2,172,959 + +0.3
Or see this region's nucleotide sequence