Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06750 and BPHYT_RS06755 are separated by 11 nucleotides BPHYT_RS06755 and BPHYT_RS06760 overlap by 4 nucleotides BPHYT_RS06760 and BPHYT_RS06765 are separated by 126 nucleotides BPHYT_RS06765 and BPHYT_RS06770 are separated by 106 nucleotides
BPHYT_RS06750: BPHYT_RS06750 - fructose-2,6-bisphosphatase, at 1,527,827 to 1,528,543
_RS06750
BPHYT_RS06755: BPHYT_RS06755 - enoyl-CoA hydratase, at 1,528,555 to 1,529,343
_RS06755
BPHYT_RS06760: BPHYT_RS06760 - 3-hydroxyacyl-CoA dehydrogenase, at 1,529,340 to 1,530,905
_RS06760
BPHYT_RS06765: BPHYT_RS06765 - glutathione S-transferase, at 1,531,032 to 1,531,679
_RS06765
BPHYT_RS06770: BPHYT_RS06770 - aminotransferase, at 1,531,786 to 1,532,958
_RS06770
Position (kb) 1529
1530
1531 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1528.479 kb on + strand at 1528.479 kb on + strand at 1528.483 kb on + strand at 1528.483 kb on + strand at 1528.533 kb on + strand at 1528.534 kb on - strand at 1529.240 kb on + strand, within BPHYT_RS06755 at 1530.136 kb on + strand, within BPHYT_RS06760 at 1530.136 kb on + strand, within BPHYT_RS06760 at 1530.149 kb on - strand, within BPHYT_RS06760 at 1530.299 kb on + strand, within BPHYT_RS06760 at 1530.300 kb on - strand, within BPHYT_RS06760 at 1530.300 kb on - strand, within BPHYT_RS06760 at 1530.341 kb on + strand, within BPHYT_RS06760 at 1530.539 kb on + strand, within BPHYT_RS06760 at 1530.539 kb on + strand, within BPHYT_RS06760 at 1530.539 kb on + strand, within BPHYT_RS06760 at 1530.539 kb on + strand, within BPHYT_RS06760 at 1530.679 kb on - strand, within BPHYT_RS06760 at 1530.679 kb on - strand, within BPHYT_RS06760 at 1530.796 kb on + strand at 1530.928 kb on - strand at 1530.928 kb on - strand at 1531.007 kb on - strand at 1531.007 kb on - strand at 1531.007 kb on - strand at 1531.068 kb on + strand at 1531.068 kb on + strand at 1531.069 kb on - strand at 1531.069 kb on - strand at 1531.233 kb on + strand, within BPHYT_RS06765 at 1531.354 kb on - strand, within BPHYT_RS06765 at 1531.465 kb on - strand, within BPHYT_RS06765 at 1531.506 kb on + strand, within BPHYT_RS06765 at 1531.506 kb on + strand, within BPHYT_RS06765 at 1531.507 kb on - strand, within BPHYT_RS06765 at 1531.507 kb on - strand, within BPHYT_RS06765 at 1531.548 kb on + strand, within BPHYT_RS06765 at 1531.549 kb on - strand, within BPHYT_RS06765 at 1531.549 kb on - strand at 1531.593 kb on + strand, within BPHYT_RS06765 at 1531.593 kb on + strand, within BPHYT_RS06765 at 1531.594 kb on - strand, within BPHYT_RS06765 at 1531.653 kb on + strand at 1531.653 kb on + strand at 1531.653 kb on + strand at 1531.653 kb on + strand at 1531.654 kb on - strand at 1531.654 kb on - strand at 1531.655 kb on + strand at 1531.656 kb on - strand at 1531.787 kb on + strand at 1531.788 kb on - strand at 1531.880 kb on + strand at 1531.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,528,479 + +0.2 1,528,479 + +0.1 1,528,483 + +0.1 1,528,483 + +0.2 1,528,533 + -3.5 1,528,534 - +0.8 1,529,240 + BPHYT_RS06755 0.87 +0.1 1,530,136 + BPHYT_RS06760 0.51 -1.5 1,530,136 + BPHYT_RS06760 0.51 -0.4 1,530,149 - BPHYT_RS06760 0.52 -3.1 1,530,299 + BPHYT_RS06760 0.61 +0.1 1,530,300 - BPHYT_RS06760 0.61 +0.7 1,530,300 - BPHYT_RS06760 0.61 +0.1 1,530,341 + BPHYT_RS06760 0.64 -2.3 1,530,539 + BPHYT_RS06760 0.77 -1.4 1,530,539 + BPHYT_RS06760 0.77 -0.7 1,530,539 + BPHYT_RS06760 0.77 -0.7 1,530,539 + BPHYT_RS06760 0.77 -1.8 1,530,679 - BPHYT_RS06760 0.86 -0.3 1,530,679 - BPHYT_RS06760 0.86 -0.8 1,530,796 + -0.6 1,530,928 - +0.4 1,530,928 - -0.0 1,531,007 - -0.2 1,531,007 - +0.5 1,531,007 - -0.3 1,531,068 + -0.9 1,531,068 + -0.2 1,531,069 - +0.3 1,531,069 - -0.2 1,531,233 + BPHYT_RS06765 0.31 +1.1 1,531,354 - BPHYT_RS06765 0.50 -0.5 1,531,465 - BPHYT_RS06765 0.67 -0.2 1,531,506 + BPHYT_RS06765 0.73 +0.3 1,531,506 + BPHYT_RS06765 0.73 -2.3 1,531,507 - BPHYT_RS06765 0.73 -0.1 1,531,507 - BPHYT_RS06765 0.73 -0.0 1,531,548 + BPHYT_RS06765 0.80 +1.1 1,531,549 - BPHYT_RS06765 0.80 +0.5 1,531,549 - -0.3 1,531,593 + BPHYT_RS06765 0.87 +0.5 1,531,593 + BPHYT_RS06765 0.87 -1.6 1,531,594 - BPHYT_RS06765 0.87 -0.6 1,531,653 + -0.3 1,531,653 + +0.1 1,531,653 + -0.5 1,531,653 + +0.0 1,531,654 - +0.2 1,531,654 - -0.3 1,531,655 + +0.8 1,531,656 - -0.8 1,531,787 + -0.1 1,531,788 - -0.0 1,531,880 + -0.1 1,531,881 - +0.1
Or see this region's nucleotide sequence