Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13985

Experiment: CDM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13975 and BBR_RS13980 are separated by 197 nucleotidesBBR_RS13980 and BBR_RS13985 are separated by 9 nucleotidesBBR_RS13985 and BBR_RS13990 are separated by 20 nucleotides BBR_RS13975: BBR_RS13975 - rhodanese-like domain-containing protein, at 912,049 to 912,441 _RS13975 BBR_RS13980: BBR_RS13980 - HD domain-containing protein, at 912,639 to 913,208 _RS13980 BBR_RS13985: BBR_RS13985 - membrane protein, at 913,218 to 913,985 _RS13985 BBR_RS13990: BBR_RS13990 - DUF975 domain-containing protein, at 914,006 to 915,826 _RS13990 Position (kb) 913 914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 912.246 kb on - strand, within BBR_RS13975at 912.251 kb on - strand, within BBR_RS13975at 912.271 kb on + strand, within BBR_RS13975at 912.276 kb on + strand, within BBR_RS13975at 912.279 kb on - strand, within BBR_RS13975at 912.310 kb on - strand, within BBR_RS13975at 912.359 kb on - strand, within BBR_RS13975at 912.359 kb on - strand, within BBR_RS13975at 912.359 kb on - strand, within BBR_RS13975at 912.362 kb on - strand, within BBR_RS13975at 912.363 kb on + strand, within BBR_RS13975at 912.371 kb on + strand, within BBR_RS13975at 912.372 kb on - strand, within BBR_RS13975at 912.430 kb on + strandat 912.430 kb on + strandat 912.435 kb on + strandat 912.443 kb on - strandat 912.457 kb on - strandat 912.488 kb on + strandat 912.488 kb on + strandat 912.488 kb on + strandat 912.493 kb on + strandat 912.517 kb on + strandat 912.555 kb on + strandat 912.560 kb on + strandat 912.563 kb on + strandat 912.570 kb on - strandat 912.637 kb on + strandat 912.691 kb on + strandat 912.699 kb on - strand, within BBR_RS13980at 912.808 kb on + strand, within BBR_RS13980at 912.897 kb on + strand, within BBR_RS13980at 912.897 kb on + strand, within BBR_RS13980at 912.915 kb on - strand, within BBR_RS13980at 912.940 kb on + strand, within BBR_RS13980at 912.966 kb on + strand, within BBR_RS13980at 913.060 kb on + strand, within BBR_RS13980at 913.087 kb on - strand, within BBR_RS13980at 913.161 kb on + strandat 913.179 kb on - strandat 913.184 kb on + strandat 913.262 kb on - strandat 913.334 kb on + strand, within BBR_RS13985at 913.377 kb on - strand, within BBR_RS13985at 913.444 kb on - strand, within BBR_RS13985at 913.487 kb on + strand, within BBR_RS13985at 913.538 kb on - strand, within BBR_RS13985at 913.628 kb on + strand, within BBR_RS13985at 913.755 kb on + strand, within BBR_RS13985at 913.755 kb on + strand, within BBR_RS13985at 913.768 kb on - strand, within BBR_RS13985at 913.774 kb on - strand, within BBR_RS13985at 913.774 kb on - strand, within BBR_RS13985at 913.783 kb on + strand, within BBR_RS13985at 913.864 kb on - strand, within BBR_RS13985at 913.864 kb on - strand, within BBR_RS13985at 913.865 kb on + strand, within BBR_RS13985at 913.894 kb on + strand, within BBR_RS13985at 913.901 kb on + strand, within BBR_RS13985at 913.909 kb on - strandat 914.024 kb on + strandat 914.065 kb on - strandat 914.092 kb on - strandat 914.113 kb on - strandat 914.117 kb on + strandat 914.125 kb on - strandat 914.141 kb on - strandat 914.182 kb on + strandat 914.186 kb on - strandat 914.191 kb on - strand, within BBR_RS13990at 914.200 kb on - strand, within BBR_RS13990at 914.216 kb on + strand, within BBR_RS13990at 914.224 kb on - strand, within BBR_RS13990at 914.259 kb on - strand, within BBR_RS13990at 914.264 kb on + strand, within BBR_RS13990at 914.265 kb on + strand, within BBR_RS13990at 914.307 kb on - strand, within BBR_RS13990at 914.339 kb on + strand, within BBR_RS13990at 914.360 kb on - strand, within BBR_RS13990at 914.368 kb on - strand, within BBR_RS13990at 914.370 kb on + strand, within BBR_RS13990at 914.403 kb on - strand, within BBR_RS13990at 914.489 kb on + strand, within BBR_RS13990at 914.549 kb on + strand, within BBR_RS13990at 914.554 kb on + strand, within BBR_RS13990at 914.556 kb on + strand, within BBR_RS13990at 914.556 kb on + strand, within BBR_RS13990at 914.556 kb on + strand, within BBR_RS13990at 914.558 kb on + strand, within BBR_RS13990at 914.564 kb on - strand, within BBR_RS13990at 914.586 kb on + strand, within BBR_RS13990at 914.631 kb on + strand, within BBR_RS13990at 914.635 kb on + strand, within BBR_RS13990at 914.669 kb on - strand, within BBR_RS13990at 914.683 kb on - strand, within BBR_RS13990at 914.683 kb on - strand, within BBR_RS13990at 914.690 kb on + strand, within BBR_RS13990at 914.756 kb on - strand, within BBR_RS13990at 914.782 kb on - strand, within BBR_RS13990at 914.790 kb on - strand, within BBR_RS13990at 914.819 kb on + strand, within BBR_RS13990at 914.898 kb on + strand, within BBR_RS13990at 914.906 kb on - strand, within BBR_RS13990

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1
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912,246 - BBR_RS13975 0.50 +0.0
912,251 - BBR_RS13975 0.51 +1.5
912,271 + BBR_RS13975 0.56 -0.3
912,276 + BBR_RS13975 0.58 -0.5
912,279 - BBR_RS13975 0.59 -0.2
912,310 - BBR_RS13975 0.66 -0.4
912,359 - BBR_RS13975 0.79 -0.1
912,359 - BBR_RS13975 0.79 -0.0
912,359 - BBR_RS13975 0.79 +0.5
912,362 - BBR_RS13975 0.80 +0.4
912,363 + BBR_RS13975 0.80 +0.1
912,371 + BBR_RS13975 0.82 -0.3
912,372 - BBR_RS13975 0.82 -0.9
912,430 + +0.3
912,430 + -0.5
912,435 + -1.8
912,443 - -1.1
912,457 - -0.3
912,488 + +1.9
912,488 + +1.3
912,488 + -0.4
912,493 + -1.8
912,517 + -0.7
912,555 + -1.4
912,560 + +0.2
912,563 + -0.1
912,570 - +0.2
912,637 + -0.3
912,691 + -0.6
912,699 - BBR_RS13980 0.11 -2.4
912,808 + BBR_RS13980 0.30 +0.0
912,897 + BBR_RS13980 0.45 -0.9
912,897 + BBR_RS13980 0.45 -0.4
912,915 - BBR_RS13980 0.48 -1.6
912,940 + BBR_RS13980 0.53 +0.5
912,966 + BBR_RS13980 0.57 +0.7
913,060 + BBR_RS13980 0.74 +1.1
913,087 - BBR_RS13980 0.79 -0.9
913,161 + -0.3
913,179 - -1.7
913,184 + -2.1
913,262 - -1.0
913,334 + BBR_RS13985 0.15 -2.4
913,377 - BBR_RS13985 0.21 -2.6
913,444 - BBR_RS13985 0.29 -0.2
913,487 + BBR_RS13985 0.35 -3.6
913,538 - BBR_RS13985 0.42 +0.0
913,628 + BBR_RS13985 0.53 -0.3
913,755 + BBR_RS13985 0.70 -1.3
913,755 + BBR_RS13985 0.70 -0.8
913,768 - BBR_RS13985 0.72 -1.7
913,774 - BBR_RS13985 0.72 -2.2
913,774 - BBR_RS13985 0.72 -1.9
913,783 + BBR_RS13985 0.74 +1.4
913,864 - BBR_RS13985 0.84 -2.6
913,864 - BBR_RS13985 0.84 -2.8
913,865 + BBR_RS13985 0.84 +0.2
913,894 + BBR_RS13985 0.88 -1.4
913,901 + BBR_RS13985 0.89 -3.7
913,909 - -1.9
914,024 + -0.3
914,065 - +0.6
914,092 - -0.6
914,113 - -0.0
914,117 + -0.2
914,125 - +0.2
914,141 - -0.1
914,182 + -1.4
914,186 - +0.5
914,191 - BBR_RS13990 0.10 +0.5
914,200 - BBR_RS13990 0.11 +1.4
914,216 + BBR_RS13990 0.12 -1.9
914,224 - BBR_RS13990 0.12 -1.8
914,259 - BBR_RS13990 0.14 +1.3
914,264 + BBR_RS13990 0.14 -2.3
914,265 + BBR_RS13990 0.14 +0.4
914,307 - BBR_RS13990 0.17 +0.2
914,339 + BBR_RS13990 0.18 -1.5
914,360 - BBR_RS13990 0.19 -0.4
914,368 - BBR_RS13990 0.20 -1.3
914,370 + BBR_RS13990 0.20 -0.6
914,403 - BBR_RS13990 0.22 +0.3
914,489 + BBR_RS13990 0.27 +0.4
914,549 + BBR_RS13990 0.30 -0.4
914,554 + BBR_RS13990 0.30 +0.8
914,556 + BBR_RS13990 0.30 -0.1
914,556 + BBR_RS13990 0.30 -0.7
914,556 + BBR_RS13990 0.30 +1.6
914,558 + BBR_RS13990 0.30 +0.4
914,564 - BBR_RS13990 0.31 +1.8
914,586 + BBR_RS13990 0.32 +0.4
914,631 + BBR_RS13990 0.34 +0.5
914,635 + BBR_RS13990 0.35 +0.6
914,669 - BBR_RS13990 0.36 -1.2
914,683 - BBR_RS13990 0.37 +2.0
914,683 - BBR_RS13990 0.37 -1.8
914,690 + BBR_RS13990 0.38 +0.2
914,756 - BBR_RS13990 0.41 +0.4
914,782 - BBR_RS13990 0.43 +0.7
914,790 - BBR_RS13990 0.43 +1.0
914,819 + BBR_RS13990 0.45 -0.8
914,898 + BBR_RS13990 0.49 +0.0
914,906 - BBR_RS13990 0.49 +0.6

Or see this region's nucleotide sequence