Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13735

Experiment: CDM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13730 and BBR_RS13735 are separated by 167 nucleotidesBBR_RS13735 and BBR_RS13740 are separated by 91 nucleotidesBBR_RS13740 and BBR_RS13745 are separated by 107 nucleotidesBBR_RS13745 and BBR_RS13750 are separated by 143 nucleotides BBR_RS13730: BBR_RS13730 - hypothetical protein, at 853,537 to 855,267 _RS13730 BBR_RS13735: BBR_RS13735 - Lon protease, at 855,435 to 856,358 _RS13735 BBR_RS13740: BBR_RS13740 - DUF3052 domain-containing protein, at 856,450 to 856,866 _RS13740 BBR_RS13745: BBR_RS13745 - tRNA-Val, at 856,974 to 857,047 _RS13745 BBR_RS13750: BBR_RS13750 - DivIVA domain-containing protein, at 857,191 to 858,789 _RS13750 Position (kb) 855 856 857Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 854.447 kb on + strand, within BBR_RS13730at 854.447 kb on + strand, within BBR_RS13730at 854.470 kb on - strand, within BBR_RS13730at 854.532 kb on - strand, within BBR_RS13730at 854.532 kb on - strand, within BBR_RS13730at 854.532 kb on - strand, within BBR_RS13730at 854.564 kb on + strand, within BBR_RS13730at 854.569 kb on + strand, within BBR_RS13730at 854.572 kb on - strand, within BBR_RS13730at 854.572 kb on - strand, within BBR_RS13730at 854.589 kb on + strand, within BBR_RS13730at 854.615 kb on + strand, within BBR_RS13730at 854.847 kb on - strand, within BBR_RS13730at 854.914 kb on + strand, within BBR_RS13730at 854.956 kb on + strand, within BBR_RS13730at 854.959 kb on - strand, within BBR_RS13730at 854.965 kb on + strand, within BBR_RS13730at 854.984 kb on - strand, within BBR_RS13730at 854.995 kb on + strand, within BBR_RS13730at 854.995 kb on + strand, within BBR_RS13730at 855.042 kb on - strand, within BBR_RS13730at 855.043 kb on + strand, within BBR_RS13730at 855.045 kb on + strand, within BBR_RS13730at 855.051 kb on - strand, within BBR_RS13730at 855.051 kb on - strand, within BBR_RS13730at 855.051 kb on - strand, within BBR_RS13730at 855.068 kb on + strand, within BBR_RS13730at 855.079 kb on - strand, within BBR_RS13730at 855.109 kb on - strandat 855.125 kb on + strandat 855.147 kb on - strandat 855.148 kb on - strandat 855.152 kb on - strandat 855.181 kb on - strandat 855.267 kb on - strandat 855.270 kb on + strandat 855.298 kb on - strandat 855.302 kb on + strandat 855.373 kb on + strandat 855.381 kb on - strandat 855.381 kb on - strandat 855.381 kb on - strandat 855.392 kb on - strandat 855.529 kb on + strand, within BBR_RS13735at 856.326 kb on - strandat 856.462 kb on + strandat 856.506 kb on - strand, within BBR_RS13740at 856.507 kb on + strand, within BBR_RS13740at 856.518 kb on + strand, within BBR_RS13740at 856.566 kb on + strand, within BBR_RS13740at 856.594 kb on + strand, within BBR_RS13740at 856.594 kb on + strand, within BBR_RS13740at 856.659 kb on + strand, within BBR_RS13740at 856.659 kb on + strand, within BBR_RS13740at 856.687 kb on - strand, within BBR_RS13740at 856.774 kb on + strand, within BBR_RS13740at 856.811 kb on + strand, within BBR_RS13740at 856.904 kb on + strandat 856.933 kb on + strandat 856.951 kb on - strandat 857.012 kb on - strand, within BBR_RS13745at 857.017 kb on + strand, within BBR_RS13745at 857.061 kb on + strandat 857.080 kb on + strandat 857.128 kb on + strandat 857.148 kb on + strandat 857.148 kb on + strandat 857.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1
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854,447 + BBR_RS13730 0.53 -0.4
854,447 + BBR_RS13730 0.53 +0.6
854,470 - BBR_RS13730 0.54 -2.7
854,532 - BBR_RS13730 0.57 -2.4
854,532 - BBR_RS13730 0.57 -0.3
854,532 - BBR_RS13730 0.57 -0.5
854,564 + BBR_RS13730 0.59 +0.0
854,569 + BBR_RS13730 0.60 +1.1
854,572 - BBR_RS13730 0.60 -0.4
854,572 - BBR_RS13730 0.60 +0.5
854,589 + BBR_RS13730 0.61 -1.4
854,615 + BBR_RS13730 0.62 -1.5
854,847 - BBR_RS13730 0.76 -1.3
854,914 + BBR_RS13730 0.80 -0.1
854,956 + BBR_RS13730 0.82 +0.5
854,959 - BBR_RS13730 0.82 +0.2
854,965 + BBR_RS13730 0.82 -0.6
854,984 - BBR_RS13730 0.84 +0.4
854,995 + BBR_RS13730 0.84 -3.0
854,995 + BBR_RS13730 0.84 -2.3
855,042 - BBR_RS13730 0.87 -0.7
855,043 + BBR_RS13730 0.87 +1.2
855,045 + BBR_RS13730 0.87 -1.0
855,051 - BBR_RS13730 0.87 +0.6
855,051 - BBR_RS13730 0.87 +0.1
855,051 - BBR_RS13730 0.87 -0.9
855,068 + BBR_RS13730 0.88 -1.1
855,079 - BBR_RS13730 0.89 +0.7
855,109 - -0.9
855,125 + +0.5
855,147 - -2.3
855,148 - -1.1
855,152 - +0.1
855,181 - +0.7
855,267 - +0.2
855,270 + -3.1
855,298 - -3.0
855,302 + -0.8
855,373 + -1.0
855,381 - -0.7
855,381 - -0.7
855,381 - -2.4
855,392 - +0.4
855,529 + BBR_RS13735 0.10 -4.2
856,326 - -2.9
856,462 + -2.5
856,506 - BBR_RS13740 0.13 -2.2
856,507 + BBR_RS13740 0.14 -3.4
856,518 + BBR_RS13740 0.16 -3.5
856,566 + BBR_RS13740 0.28 -4.1
856,594 + BBR_RS13740 0.35 -4.0
856,594 + BBR_RS13740 0.35 -2.7
856,659 + BBR_RS13740 0.50 -1.2
856,659 + BBR_RS13740 0.50 -1.9
856,687 - BBR_RS13740 0.57 -1.3
856,774 + BBR_RS13740 0.78 -2.6
856,811 + BBR_RS13740 0.87 -2.2
856,904 + -2.3
856,933 + -4.0
856,951 - -2.2
857,012 - BBR_RS13745 0.51 +0.9
857,017 + BBR_RS13745 0.58 +0.1
857,061 + -1.1
857,080 + -0.2
857,128 + +1.5
857,148 + -2.9
857,148 + +0.3
857,156 - -0.9

Or see this region's nucleotide sequence