Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_30155

Experiment: copper (II) chloride 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_30150 and AO356_30155 are separated by 539 nucleotidesAO356_30155 and AO356_30160 are separated by 383 nucleotides AO356_30150: AO356_30150 - hypothetical protein, at 7,036,359 to 7,037,600 _30150 AO356_30155: AO356_30155 - hypothetical protein, at 7,038,140 to 7,038,901 _30155 AO356_30160: AO356_30160 - hypothetical protein, at 7,039,285 to 7,039,632 _30160 Position (kb) 7038 7039Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 7037.168 kb on - strand, within AO356_30150at 7037.313 kb on + strand, within AO356_30150at 7037.449 kb on + strand, within AO356_30150at 7037.450 kb on - strand, within AO356_30150at 7037.450 kb on - strand, within AO356_30150at 7037.507 kb on + strandat 7037.508 kb on - strandat 7037.585 kb on + strandat 7037.586 kb on - strandat 7037.586 kb on - strandat 7037.588 kb on + strandat 7037.588 kb on + strandat 7037.796 kb on + strandat 7037.797 kb on - strandat 7037.808 kb on + strandat 7037.808 kb on + strandat 7037.808 kb on + strandat 7037.808 kb on + strandat 7037.808 kb on + strandat 7037.809 kb on - strandat 7037.809 kb on - strandat 7037.809 kb on - strandat 7037.809 kb on - strandat 7037.812 kb on - strandat 7037.903 kb on - strandat 7037.959 kb on + strandat 7037.981 kb on - strandat 7038.006 kb on + strandat 7038.006 kb on + strandat 7038.056 kb on + strandat 7038.056 kb on + strandat 7038.056 kb on + strandat 7038.071 kb on + strandat 7038.085 kb on + strandat 7038.148 kb on + strandat 7038.246 kb on + strand, within AO356_30155at 7038.246 kb on + strand, within AO356_30155at 7038.247 kb on - strand, within AO356_30155at 7038.247 kb on - strand, within AO356_30155at 7038.293 kb on - strand, within AO356_30155at 7038.334 kb on - strand, within AO356_30155at 7038.385 kb on - strand, within AO356_30155at 7038.426 kb on + strand, within AO356_30155at 7038.426 kb on + strand, within AO356_30155at 7038.427 kb on - strand, within AO356_30155at 7038.496 kb on - strand, within AO356_30155at 7038.499 kb on + strand, within AO356_30155at 7038.500 kb on - strand, within AO356_30155at 7038.644 kb on - strand, within AO356_30155at 7038.784 kb on + strand, within AO356_30155at 7038.917 kb on - strandat 7038.948 kb on + strandat 7038.949 kb on - strandat 7038.991 kb on + strandat 7039.171 kb on + strandat 7039.171 kb on + strandat 7039.171 kb on + strandat 7039.171 kb on + strandat 7039.172 kb on - strandat 7039.172 kb on - strandat 7039.332 kb on + strand, within AO356_30160at 7039.373 kb on + strand, within AO356_30160at 7039.373 kb on + strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.375 kb on + strand, within AO356_30160at 7039.375 kb on + strand, within AO356_30160at 7039.375 kb on + strand, within AO356_30160at 7039.375 kb on + strand, within AO356_30160at 7039.375 kb on + strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.381 kb on + strand, within AO356_30160at 7039.381 kb on + strand, within AO356_30160at 7039.381 kb on + strand, within AO356_30160at 7039.381 kb on + strand, within AO356_30160at 7039.381 kb on + strand, within AO356_30160at 7039.438 kb on + strand, within AO356_30160at 7039.455 kb on + strand, within AO356_30160at 7039.455 kb on + strand, within AO356_30160at 7039.455 kb on + strand, within AO356_30160at 7039.456 kb on - strand, within AO356_30160at 7039.456 kb on - strand, within AO356_30160at 7039.456 kb on - strand, within AO356_30160at 7039.613 kb on + strandat 7039.647 kb on + strandat 7039.648 kb on - strandat 7039.689 kb on + strandat 7039.689 kb on + strandat 7039.766 kb on - strandat 7039.809 kb on + strandat 7039.809 kb on + strandat 7039.855 kb on + strandat 7039.855 kb on + strandat 7039.856 kb on - strandat 7039.860 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
remove
7,037,168 - AO356_30150 0.65 +1.5
7,037,313 + AO356_30150 0.77 +0.4
7,037,449 + AO356_30150 0.88 -1.4
7,037,450 - AO356_30150 0.88 +0.2
7,037,450 - AO356_30150 0.88 +2.9
7,037,507 + -0.4
7,037,508 - +0.2
7,037,585 + +1.1
7,037,586 - +0.8
7,037,586 - -1.2
7,037,588 + -2.0
7,037,588 + -3.0
7,037,796 + +0.2
7,037,797 - -1.8
7,037,808 + +0.8
7,037,808 + -1.8
7,037,808 + -1.4
7,037,808 + +0.2
7,037,808 + +0.6
7,037,809 - -0.7
7,037,809 - -0.5
7,037,809 - -1.8
7,037,809 - +0.2
7,037,812 - -2.6
7,037,903 - +0.1
7,037,959 + +1.0
7,037,981 - +0.2
7,038,006 + -1.2
7,038,006 + +0.2
7,038,056 + +0.2
7,038,056 + -0.5
7,038,056 + -0.4
7,038,071 + -2.6
7,038,085 + -1.6
7,038,148 + -0.1
7,038,246 + AO356_30155 0.14 -0.1
7,038,246 + AO356_30155 0.14 -0.0
7,038,247 - AO356_30155 0.14 +0.7
7,038,247 - AO356_30155 0.14 -0.2
7,038,293 - AO356_30155 0.20 +0.3
7,038,334 - AO356_30155 0.25 +0.2
7,038,385 - AO356_30155 0.32 +1.4
7,038,426 + AO356_30155 0.38 -1.4
7,038,426 + AO356_30155 0.38 -0.8
7,038,427 - AO356_30155 0.38 +1.3
7,038,496 - AO356_30155 0.47 +0.1
7,038,499 + AO356_30155 0.47 +1.1
7,038,500 - AO356_30155 0.47 +0.8
7,038,644 - AO356_30155 0.66 +0.8
7,038,784 + AO356_30155 0.85 +2.2
7,038,917 - -0.8
7,038,948 + +0.4
7,038,949 - +1.5
7,038,991 + +0.8
7,039,171 + +0.6
7,039,171 + +1.2
7,039,171 + -0.6
7,039,171 + +1.9
7,039,172 - +0.5
7,039,172 - +2.0
7,039,332 + AO356_30160 0.14 -0.2
7,039,373 + AO356_30160 0.25 +1.1
7,039,373 + AO356_30160 0.25 +1.4
7,039,374 - AO356_30160 0.26 +1.1
7,039,374 - AO356_30160 0.26 -0.7
7,039,374 - AO356_30160 0.26 +0.8
7,039,374 - AO356_30160 0.26 -0.1
7,039,374 - AO356_30160 0.26 +0.9
7,039,374 - AO356_30160 0.26 -1.5
7,039,374 - AO356_30160 0.26 -0.9
7,039,375 + AO356_30160 0.26 -3.2
7,039,375 + AO356_30160 0.26 -2.6
7,039,375 + AO356_30160 0.26 -3.2
7,039,375 + AO356_30160 0.26 +0.4
7,039,375 + AO356_30160 0.26 +0.7
7,039,376 - AO356_30160 0.26 -1.5
7,039,376 - AO356_30160 0.26 +2.7
7,039,376 - AO356_30160 0.26 -0.3
7,039,376 - AO356_30160 0.26 +0.8
7,039,376 - AO356_30160 0.26 -2.0
7,039,376 - AO356_30160 0.26 -0.1
7,039,376 - AO356_30160 0.26 -3.4
7,039,381 + AO356_30160 0.28 +0.7
7,039,381 + AO356_30160 0.28 -0.1
7,039,381 + AO356_30160 0.28 +1.4
7,039,381 + AO356_30160 0.28 -2.6
7,039,381 + AO356_30160 0.28 +0.2
7,039,438 + AO356_30160 0.44 -1.7
7,039,455 + AO356_30160 0.49 +0.6
7,039,455 + AO356_30160 0.49 -0.1
7,039,455 + AO356_30160 0.49 -1.8
7,039,456 - AO356_30160 0.49 +0.2
7,039,456 - AO356_30160 0.49 +2.1
7,039,456 - AO356_30160 0.49 -1.2
7,039,613 + +0.0
7,039,647 + +0.9
7,039,648 - +0.8
7,039,689 + +1.2
7,039,689 + +1.4
7,039,766 - +1.7
7,039,809 + +1.2
7,039,809 + +1.1
7,039,855 + +2.1
7,039,855 + +1.0
7,039,856 - -0.6
7,039,860 - -2.1

Or see this region's nucleotide sequence