Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28800

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28795 and AO356_28800 are separated by 46 nucleotidesAO356_28800 and AO356_28805 are separated by 16 nucleotides AO356_28795: AO356_28795 - hypothetical protein, at 6,695,893 to 6,697,041 _28795 AO356_28800: AO356_28800 - hypothetical protein, at 6,697,088 to 6,698,935 _28800 AO356_28805: AO356_28805 - MFS transporter, at 6,698,952 to 6,700,196 _28805 Position (kb) 6697 6698 6699Strain fitness (log2 ratio) -2 -1 0 1 2at 6696.188 kb on - strand, within AO356_28795at 6696.211 kb on + strand, within AO356_28795at 6696.212 kb on - strand, within AO356_28795at 6696.212 kb on - strand, within AO356_28795at 6696.377 kb on - strand, within AO356_28795at 6696.529 kb on + strand, within AO356_28795at 6696.619 kb on + strand, within AO356_28795at 6696.620 kb on - strand, within AO356_28795at 6696.844 kb on + strand, within AO356_28795at 6696.844 kb on + strand, within AO356_28795at 6696.976 kb on + strandat 6696.976 kb on + strandat 6696.977 kb on - strandat 6697.009 kb on + strandat 6697.064 kb on - strandat 6697.082 kb on - strandat 6697.220 kb on + strandat 6697.539 kb on - strand, within AO356_28800at 6697.614 kb on - strand, within AO356_28800at 6697.614 kb on - strand, within AO356_28800at 6697.614 kb on - strand, within AO356_28800at 6697.887 kb on - strand, within AO356_28800at 6697.890 kb on + strand, within AO356_28800at 6697.890 kb on + strand, within AO356_28800at 6697.891 kb on - strand, within AO356_28800at 6698.399 kb on + strand, within AO356_28800at 6698.444 kb on + strand, within AO356_28800at 6698.444 kb on + strand, within AO356_28800at 6698.445 kb on - strand, within AO356_28800at 6698.549 kb on + strand, within AO356_28800at 6698.882 kb on + strandat 6698.892 kb on - strandat 6698.892 kb on - strandat 6699.001 kb on - strandat 6699.007 kb on + strandat 6699.126 kb on + strand, within AO356_28805at 6699.126 kb on + strand, within AO356_28805at 6699.127 kb on - strand, within AO356_28805at 6699.127 kb on - strand, within AO356_28805at 6699.336 kb on + strand, within AO356_28805at 6699.395 kb on - strand, within AO356_28805at 6699.687 kb on + strand, within AO356_28805at 6699.687 kb on + strand, within AO356_28805at 6699.688 kb on - strand, within AO356_28805at 6699.730 kb on + strand, within AO356_28805at 6699.736 kb on - strand, within AO356_28805at 6699.831 kb on + strand, within AO356_28805at 6699.831 kb on + strand, within AO356_28805at 6699.831 kb on + strand, within AO356_28805at 6699.832 kb on - strand, within AO356_28805at 6699.906 kb on + strand, within AO356_28805at 6699.907 kb on - strand, within AO356_28805at 6699.907 kb on - strand, within AO356_28805

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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6,696,188 - AO356_28795 0.26 +0.2
6,696,211 + AO356_28795 0.28 +2.1
6,696,212 - AO356_28795 0.28 -0.6
6,696,212 - AO356_28795 0.28 -2.4
6,696,377 - AO356_28795 0.42 +1.1
6,696,529 + AO356_28795 0.55 -1.0
6,696,619 + AO356_28795 0.63 -1.4
6,696,620 - AO356_28795 0.63 -2.1
6,696,844 + AO356_28795 0.83 +0.7
6,696,844 + AO356_28795 0.83 -1.7
6,696,976 + +0.1
6,696,976 + +1.7
6,696,977 - +0.9
6,697,009 + -0.2
6,697,064 - +2.1
6,697,082 - +0.9
6,697,220 + +0.9
6,697,539 - AO356_28800 0.24 -1.2
6,697,614 - AO356_28800 0.28 -1.2
6,697,614 - AO356_28800 0.28 -0.4
6,697,614 - AO356_28800 0.28 -0.2
6,697,887 - AO356_28800 0.43 -0.5
6,697,890 + AO356_28800 0.43 +0.8
6,697,890 + AO356_28800 0.43 +1.4
6,697,891 - AO356_28800 0.43 -0.6
6,698,399 + AO356_28800 0.71 +1.0
6,698,444 + AO356_28800 0.73 +0.4
6,698,444 + AO356_28800 0.73 -0.7
6,698,445 - AO356_28800 0.73 -0.6
6,698,549 + AO356_28800 0.79 +0.5
6,698,882 + +0.7
6,698,892 - -2.0
6,698,892 - +0.5
6,699,001 - -0.5
6,699,007 + +0.0
6,699,126 + AO356_28805 0.14 -0.8
6,699,126 + AO356_28805 0.14 +0.7
6,699,127 - AO356_28805 0.14 +0.1
6,699,127 - AO356_28805 0.14 +2.6
6,699,336 + AO356_28805 0.31 -1.1
6,699,395 - AO356_28805 0.36 +1.0
6,699,687 + AO356_28805 0.59 -2.1
6,699,687 + AO356_28805 0.59 +1.3
6,699,688 - AO356_28805 0.59 -0.4
6,699,730 + AO356_28805 0.62 +0.6
6,699,736 - AO356_28805 0.63 +0.2
6,699,831 + AO356_28805 0.71 +0.2
6,699,831 + AO356_28805 0.71 -0.6
6,699,831 + AO356_28805 0.71 +1.8
6,699,832 - AO356_28805 0.71 +0.2
6,699,906 + AO356_28805 0.77 -2.3
6,699,907 - AO356_28805 0.77 +0.2
6,699,907 - AO356_28805 0.77 +0.8

Or see this region's nucleotide sequence