Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28410

Experiment: copper (II) chloride 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_28400 and AO356_28405 are separated by 39 nucleotidesAO356_28405 and AO356_28410 are separated by 377 nucleotidesAO356_28410 and AO356_28415 are separated by 585 nucleotides AO356_28400: AO356_28400 - dimethyl sulfone monooxygenase SfnG, at 6,604,696 to 6,605,793 _28400 AO356_28405: AO356_28405 - NADH-dependent FMN reductase, at 6,605,833 to 6,606,396 _28405 AO356_28410: AO356_28410 - monooxygenase, at 6,606,774 to 6,608,018 _28410 AO356_28415: AO356_28415 - hypothetical protein, at 6,608,604 to 6,608,969 _28415 Position (kb) 6606 6607 6608 6609Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6605.800 kb on + strandat 6605.963 kb on + strand, within AO356_28405at 6606.076 kb on + strand, within AO356_28405at 6606.135 kb on - strand, within AO356_28405at 6606.135 kb on - strand, within AO356_28405at 6606.401 kb on + strandat 6606.767 kb on + strandat 6606.768 kb on - strandat 6606.826 kb on - strandat 6606.972 kb on + strand, within AO356_28410at 6607.107 kb on - strand, within AO356_28410at 6607.252 kb on - strand, within AO356_28410at 6607.269 kb on - strand, within AO356_28410at 6607.293 kb on + strand, within AO356_28410at 6607.293 kb on + strand, within AO356_28410at 6607.294 kb on - strand, within AO356_28410at 6607.294 kb on - strand, within AO356_28410at 6607.476 kb on + strand, within AO356_28410at 6607.477 kb on - strand, within AO356_28410at 6607.659 kb on + strand, within AO356_28410at 6607.659 kb on + strand, within AO356_28410at 6607.660 kb on - strand, within AO356_28410at 6607.929 kb on + strandat 6607.929 kb on + strandat 6607.944 kb on - strandat 6608.185 kb on - strandat 6608.606 kb on - strandat 6608.833 kb on + strand, within AO356_28415at 6608.833 kb on + strand, within AO356_28415at 6608.833 kb on + strand, within AO356_28415at 6608.866 kb on + strand, within AO356_28415at 6608.867 kb on - strand, within AO356_28415at 6608.867 kb on - strand, within AO356_28415at 6608.867 kb on - strand, within AO356_28415at 6608.986 kb on - strandat 6608.995 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
remove
6,605,800 + -1.1
6,605,963 + AO356_28405 0.23 +0.9
6,606,076 + AO356_28405 0.43 +0.5
6,606,135 - AO356_28405 0.54 +0.8
6,606,135 - AO356_28405 0.54 -1.4
6,606,401 + +1.4
6,606,767 + -1.8
6,606,768 - -1.3
6,606,826 - +0.4
6,606,972 + AO356_28410 0.16 -2.1
6,607,107 - AO356_28410 0.27 +0.6
6,607,252 - AO356_28410 0.38 -0.7
6,607,269 - AO356_28410 0.40 -2.0
6,607,293 + AO356_28410 0.42 -1.1
6,607,293 + AO356_28410 0.42 +1.9
6,607,294 - AO356_28410 0.42 -0.1
6,607,294 - AO356_28410 0.42 +0.2
6,607,476 + AO356_28410 0.56 +1.6
6,607,477 - AO356_28410 0.56 -0.1
6,607,659 + AO356_28410 0.71 -0.0
6,607,659 + AO356_28410 0.71 -0.4
6,607,660 - AO356_28410 0.71 +2.0
6,607,929 + +1.4
6,607,929 + +1.5
6,607,944 - -0.8
6,608,185 - -2.3
6,608,606 - -2.0
6,608,833 + AO356_28415 0.63 +0.2
6,608,833 + AO356_28415 0.63 -0.2
6,608,833 + AO356_28415 0.63 +0.2
6,608,866 + AO356_28415 0.72 +3.0
6,608,867 - AO356_28415 0.72 +0.3
6,608,867 - AO356_28415 0.72 +0.7
6,608,867 - AO356_28415 0.72 +0.4
6,608,986 - -1.8
6,608,995 - +0.3

Or see this region's nucleotide sequence