Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28375

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28365 and AO356_28370 overlap by 9 nucleotidesAO356_28370 and AO356_28375 are separated by 56 nucleotidesAO356_28375 and AO356_28380 are separated by 72 nucleotides AO356_28365: AO356_28365 - Fis family transcriptional regulator, at 6,597,350 to 6,598,453 _28365 AO356_28370: AO356_28370 - ABC transporter ATP-binding protein, at 6,598,445 to 6,599,242 _28370 AO356_28375: AO356_28375 - ABC transporter permease, at 6,599,299 to 6,600,624 _28375 AO356_28380: AO356_28380 - ABC transporter permease, at 6,600,697 to 6,601,764 _28380 Position (kb) 6599 6600 6601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6598.510 kb on - strandat 6598.587 kb on + strand, within AO356_28370at 6598.851 kb on + strand, within AO356_28370at 6598.852 kb on - strand, within AO356_28370at 6598.852 kb on - strand, within AO356_28370at 6598.852 kb on - strand, within AO356_28370at 6599.629 kb on + strand, within AO356_28375at 6599.629 kb on + strand, within AO356_28375at 6599.663 kb on + strand, within AO356_28375at 6599.663 kb on + strand, within AO356_28375at 6599.663 kb on + strand, within AO356_28375at 6599.664 kb on - strand, within AO356_28375at 6599.667 kb on - strand, within AO356_28375at 6600.024 kb on - strand, within AO356_28375at 6600.068 kb on + strand, within AO356_28375at 6600.171 kb on - strand, within AO356_28375at 6600.228 kb on + strand, within AO356_28375at 6600.389 kb on + strand, within AO356_28375at 6600.390 kb on - strand, within AO356_28375at 6600.390 kb on - strand, within AO356_28375at 6600.452 kb on + strand, within AO356_28375at 6600.453 kb on - strand, within AO356_28375at 6600.461 kb on + strand, within AO356_28375at 6600.462 kb on - strand, within AO356_28375at 6600.537 kb on - strandat 6600.639 kb on + strandat 6600.653 kb on + strandat 6600.803 kb on - strandat 6601.014 kb on - strand, within AO356_28380at 6601.221 kb on - strand, within AO356_28380at 6601.256 kb on - strand, within AO356_28380at 6601.370 kb on + strand, within AO356_28380at 6601.478 kb on - strand, within AO356_28380at 6601.490 kb on + strand, within AO356_28380at 6601.490 kb on + strand, within AO356_28380at 6601.491 kb on - strand, within AO356_28380

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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6,598,510 - +1.4
6,598,587 + AO356_28370 0.18 +0.5
6,598,851 + AO356_28370 0.51 +1.7
6,598,852 - AO356_28370 0.51 -0.5
6,598,852 - AO356_28370 0.51 -0.8
6,598,852 - AO356_28370 0.51 +0.9
6,599,629 + AO356_28375 0.25 -1.2
6,599,629 + AO356_28375 0.25 +0.7
6,599,663 + AO356_28375 0.27 -0.5
6,599,663 + AO356_28375 0.27 +2.8
6,599,663 + AO356_28375 0.27 -2.8
6,599,664 - AO356_28375 0.28 -0.8
6,599,667 - AO356_28375 0.28 +0.7
6,600,024 - AO356_28375 0.55 +1.8
6,600,068 + AO356_28375 0.58 -0.8
6,600,171 - AO356_28375 0.66 -1.3
6,600,228 + AO356_28375 0.70 +1.5
6,600,389 + AO356_28375 0.82 +0.7
6,600,390 - AO356_28375 0.82 +1.6
6,600,390 - AO356_28375 0.82 -1.8
6,600,452 + AO356_28375 0.87 +2.2
6,600,453 - AO356_28375 0.87 -1.8
6,600,461 + AO356_28375 0.88 +0.9
6,600,462 - AO356_28375 0.88 -0.1
6,600,537 - +0.8
6,600,639 + -1.1
6,600,653 + -0.0
6,600,803 - +1.6
6,601,014 - AO356_28380 0.30 +0.2
6,601,221 - AO356_28380 0.49 -2.6
6,601,256 - AO356_28380 0.52 +0.4
6,601,370 + AO356_28380 0.63 +0.3
6,601,478 - AO356_28380 0.73 -0.1
6,601,490 + AO356_28380 0.74 -0.1
6,601,490 + AO356_28380 0.74 +0.2
6,601,491 - AO356_28380 0.74 -1.2

Or see this region's nucleotide sequence