Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28340 and AO356_28345 are separated by 504 nucleotides AO356_28345 and AO356_28350 are separated by 51 nucleotides
AO356_28340: AO356_28340 - GABA permease, at 6,590,607 to 6,592,007
_28340
AO356_28345: AO356_28345 - TetR family transcriptional regulator, at 6,592,512 to 6,593,123
_28345
AO356_28350: AO356_28350 - spermidine/putrescine ABC transporter substrate-binding protein, at 6,593,175 to 6,594,278
_28350
Position (kb)
6592
6593
6594 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6591.557 kb on - strand, within AO356_28340 at 6591.557 kb on - strand, within AO356_28340 at 6591.651 kb on + strand, within AO356_28340 at 6591.652 kb on - strand, within AO356_28340 at 6591.706 kb on + strand, within AO356_28340 at 6591.757 kb on + strand, within AO356_28340 at 6591.757 kb on + strand, within AO356_28340 at 6591.847 kb on + strand, within AO356_28340 at 6592.014 kb on + strand at 6592.015 kb on - strand at 6592.273 kb on + strand at 6592.274 kb on - strand at 6592.274 kb on - strand at 6592.299 kb on + strand at 6592.343 kb on - strand at 6592.343 kb on - strand at 6592.494 kb on + strand at 6592.663 kb on - strand, within AO356_28345 at 6592.963 kb on + strand, within AO356_28345 at 6593.020 kb on + strand, within AO356_28345 at 6593.020 kb on + strand, within AO356_28345 at 6593.020 kb on + strand, within AO356_28345 at 6593.020 kb on + strand, within AO356_28345 at 6593.281 kb on + strand at 6593.282 kb on - strand at 6593.282 kb on - strand at 6593.282 kb on - strand at 6593.282 kb on - strand at 6593.282 kb on - strand at 6593.395 kb on + strand, within AO356_28350 at 6593.410 kb on + strand, within AO356_28350 at 6593.496 kb on + strand, within AO356_28350 at 6593.620 kb on + strand, within AO356_28350 at 6593.629 kb on + strand, within AO356_28350 at 6593.668 kb on + strand, within AO356_28350 at 6593.668 kb on + strand, within AO356_28350 at 6593.668 kb on + strand, within AO356_28350 at 6593.669 kb on - strand, within AO356_28350 at 6593.669 kb on - strand, within AO356_28350 at 6593.707 kb on + strand, within AO356_28350 at 6593.707 kb on + strand, within AO356_28350 at 6593.708 kb on - strand, within AO356_28350 at 6593.835 kb on + strand, within AO356_28350 at 6593.836 kb on - strand, within AO356_28350 at 6593.844 kb on + strand, within AO356_28350 at 6593.887 kb on + strand, within AO356_28350 at 6593.888 kb on - strand, within AO356_28350 at 6593.888 kb on - strand, within AO356_28350 at 6593.888 kb on - strand, within AO356_28350 at 6594.112 kb on + strand, within AO356_28350
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 6,591,557 - AO356_28340 0.68 +1.3 6,591,557 - AO356_28340 0.68 -0.6 6,591,651 + AO356_28340 0.75 +0.3 6,591,652 - AO356_28340 0.75 +0.2 6,591,706 + AO356_28340 0.78 +0.7 6,591,757 + AO356_28340 0.82 +0.6 6,591,757 + AO356_28340 0.82 +0.3 6,591,847 + AO356_28340 0.89 +0.2 6,592,014 + -1.8 6,592,015 - +0.2 6,592,273 + +0.1 6,592,274 - -0.2 6,592,274 - -1.5 6,592,299 + -0.7 6,592,343 - -1.4 6,592,343 - +1.0 6,592,494 + -0.5 6,592,663 - AO356_28345 0.25 -2.4 6,592,963 + AO356_28345 0.74 +0.6 6,593,020 + AO356_28345 0.83 +1.2 6,593,020 + AO356_28345 0.83 +0.8 6,593,020 + AO356_28345 0.83 +1.3 6,593,020 + AO356_28345 0.83 +1.2 6,593,281 + -0.5 6,593,282 - +1.5 6,593,282 - -3.0 6,593,282 - -0.1 6,593,282 - -0.8 6,593,282 - -1.5 6,593,395 + AO356_28350 0.20 +0.8 6,593,410 + AO356_28350 0.21 +0.8 6,593,496 + AO356_28350 0.29 -2.4 6,593,620 + AO356_28350 0.40 +0.7 6,593,629 + AO356_28350 0.41 +0.8 6,593,668 + AO356_28350 0.45 +0.7 6,593,668 + AO356_28350 0.45 +0.5 6,593,668 + AO356_28350 0.45 -2.0 6,593,669 - AO356_28350 0.45 -0.8 6,593,669 - AO356_28350 0.45 -0.9 6,593,707 + AO356_28350 0.48 -0.5 6,593,707 + AO356_28350 0.48 -1.4 6,593,708 - AO356_28350 0.48 -0.0 6,593,835 + AO356_28350 0.60 +0.2 6,593,836 - AO356_28350 0.60 +0.7 6,593,844 + AO356_28350 0.61 -1.6 6,593,887 + AO356_28350 0.64 +0.2 6,593,888 - AO356_28350 0.65 +1.0 6,593,888 - AO356_28350 0.65 +0.2 6,593,888 - AO356_28350 0.65 -0.2 6,594,112 + AO356_28350 0.85 -2.8
Or see this region's nucleotide sequence