Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27970

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27965 and AO356_27970 are separated by 285 nucleotidesAO356_27970 and AO356_27975 are separated by 671 nucleotides AO356_27965: AO356_27965 - benzaldehyde dehydrogenase, at 6,383,392 to 6,384,864 _27965 AO356_27970: AO356_27970 - Fis family transcriptional regulator, at 6,385,150 to 6,386,925 _27970 AO356_27975: AO356_27975 - hypothetical protein, at 6,387,597 to 6,387,923 _27975 Position (kb) 6385 6386 6387Strain fitness (log2 ratio) -3 -2 -1 0 1at 6384.186 kb on + strand, within AO356_27965at 6384.187 kb on - strand, within AO356_27965at 6384.866 kb on + strandat 6384.866 kb on + strandat 6384.866 kb on + strandat 6384.866 kb on + strandat 6384.867 kb on - strandat 6384.867 kb on - strandat 6385.094 kb on + strandat 6385.095 kb on - strandat 6385.095 kb on - strandat 6385.101 kb on + strandat 6385.156 kb on - strandat 6385.156 kb on - strandat 6385.299 kb on + strandat 6385.299 kb on + strandat 6385.577 kb on - strand, within AO356_27970at 6385.676 kb on - strand, within AO356_27970at 6385.816 kb on + strand, within AO356_27970at 6386.143 kb on + strand, within AO356_27970at 6386.144 kb on - strand, within AO356_27970at 6386.389 kb on + strand, within AO356_27970at 6386.447 kb on + strand, within AO356_27970at 6386.447 kb on + strand, within AO356_27970at 6386.448 kb on - strand, within AO356_27970at 6386.448 kb on - strand, within AO356_27970at 6386.448 kb on - strand, within AO356_27970at 6386.534 kb on + strand, within AO356_27970at 6386.535 kb on - strand, within AO356_27970at 6386.535 kb on - strand, within AO356_27970at 6387.011 kb on + strandat 6387.021 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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6,384,186 + AO356_27965 0.54 +1.5
6,384,187 - AO356_27965 0.54 +0.8
6,384,866 + +0.7
6,384,866 + +0.6
6,384,866 + +0.2
6,384,866 + -2.8
6,384,867 - -1.8
6,384,867 - -2.4
6,385,094 + +0.3
6,385,095 - -0.5
6,385,095 - -0.8
6,385,101 + +1.2
6,385,156 - +1.4
6,385,156 - +0.6
6,385,299 + -0.8
6,385,299 + +1.0
6,385,577 - AO356_27970 0.24 +0.8
6,385,676 - AO356_27970 0.30 +0.6
6,385,816 + AO356_27970 0.38 +1.0
6,386,143 + AO356_27970 0.56 +1.7
6,386,144 - AO356_27970 0.56 +1.0
6,386,389 + AO356_27970 0.70 -0.8
6,386,447 + AO356_27970 0.73 -1.1
6,386,447 + AO356_27970 0.73 +0.2
6,386,448 - AO356_27970 0.73 +1.0
6,386,448 - AO356_27970 0.73 -0.4
6,386,448 - AO356_27970 0.73 -1.6
6,386,534 + AO356_27970 0.78 -0.6
6,386,535 - AO356_27970 0.78 +0.6
6,386,535 - AO356_27970 0.78 +0.7
6,387,011 + -1.6
6,387,021 - -3.2

Or see this region's nucleotide sequence