Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27560

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27555 and AO356_27560 overlap by 4 nucleotidesAO356_27560 and AO356_27565 are separated by 219 nucleotides AO356_27555: AO356_27555 - multidrug transporter, at 6,284,509 to 6,287,589 _27555 AO356_27560: AO356_27560 - hypothetical protein, at 6,287,586 to 6,288,695 _27560 AO356_27565: AO356_27565 - RND transporter, at 6,288,915 to 6,290,378 _27565 Position (kb) 6287 6288 6289Strain fitness (log2 ratio) -3 -2 -1 0 1at 6286.791 kb on - strand, within AO356_27555at 6287.258 kb on + strand, within AO356_27555at 6287.258 kb on + strand, within AO356_27555at 6287.439 kb on + strandat 6287.440 kb on - strandat 6287.923 kb on + strand, within AO356_27560at 6287.923 kb on + strand, within AO356_27560at 6287.923 kb on + strand, within AO356_27560at 6287.923 kb on + strand, within AO356_27560at 6287.924 kb on - strand, within AO356_27560at 6287.924 kb on - strand, within AO356_27560at 6288.011 kb on - strand, within AO356_27560at 6288.570 kb on + strand, within AO356_27560at 6288.695 kb on + strandat 6288.695 kb on + strandat 6288.695 kb on + strandat 6288.695 kb on + strandat 6288.695 kb on + strandat 6288.696 kb on - strandat 6288.696 kb on - strandat 6288.696 kb on - strandat 6288.696 kb on - strandat 6288.696 kb on - strandat 6288.707 kb on - strandat 6288.707 kb on - strandat 6288.806 kb on + strandat 6288.828 kb on - strandat 6289.306 kb on - strand, within AO356_27565at 6289.322 kb on + strand, within AO356_27565at 6289.322 kb on + strand, within AO356_27565at 6289.323 kb on - strand, within AO356_27565at 6289.326 kb on + strand, within AO356_27565at 6289.473 kb on + strand, within AO356_27565at 6289.473 kb on + strand, within AO356_27565at 6289.474 kb on - strand, within AO356_27565at 6289.474 kb on - strand, within AO356_27565at 6289.474 kb on - strand, within AO356_27565at 6289.566 kb on + strand, within AO356_27565

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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6,286,791 - AO356_27555 0.74 -1.8
6,287,258 + AO356_27555 0.89 +0.2
6,287,258 + AO356_27555 0.89 -1.1
6,287,439 + +0.0
6,287,440 - +0.5
6,287,923 + AO356_27560 0.30 -0.6
6,287,923 + AO356_27560 0.30 +0.4
6,287,923 + AO356_27560 0.30 +0.4
6,287,923 + AO356_27560 0.30 -2.8
6,287,924 - AO356_27560 0.30 +0.4
6,287,924 - AO356_27560 0.30 -1.1
6,288,011 - AO356_27560 0.38 +0.2
6,288,570 + AO356_27560 0.89 -1.8
6,288,695 + -0.8
6,288,695 + -0.2
6,288,695 + -2.4
6,288,695 + -0.0
6,288,695 + +0.2
6,288,696 - -3.6
6,288,696 - -1.5
6,288,696 - +0.1
6,288,696 - -0.7
6,288,696 - -0.8
6,288,707 - -0.4
6,288,707 - +1.0
6,288,806 + -0.2
6,288,828 - -1.4
6,289,306 - AO356_27565 0.27 +0.7
6,289,322 + AO356_27565 0.28 -0.8
6,289,322 + AO356_27565 0.28 +1.1
6,289,323 - AO356_27565 0.28 -3.1
6,289,326 + AO356_27565 0.28 +1.5
6,289,473 + AO356_27565 0.38 -0.7
6,289,473 + AO356_27565 0.38 +0.2
6,289,474 - AO356_27565 0.38 -0.8
6,289,474 - AO356_27565 0.38 -0.7
6,289,474 - AO356_27565 0.38 +0.3
6,289,566 + AO356_27565 0.44 -0.8

Or see this region's nucleotide sequence