Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25965

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25960 and AO356_25965 are separated by 41 nucleotidesAO356_25965 and AO356_25970 are separated by 133 nucleotides AO356_25960: AO356_25960 - hypothetical protein, at 5,867,951 to 5,869,300 _25960 AO356_25965: AO356_25965 - AsnC family transcriptional regulator, at 5,869,342 to 5,869,779 _25965 AO356_25970: AO356_25970 - multidrug DMT transporter permease, at 5,869,913 to 5,870,806 _25970 Position (kb) 5869 5870Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5868.373 kb on + strand, within AO356_25960at 5868.373 kb on + strand, within AO356_25960at 5868.398 kb on + strand, within AO356_25960at 5868.398 kb on + strand, within AO356_25960at 5868.399 kb on - strand, within AO356_25960at 5868.413 kb on + strand, within AO356_25960at 5868.413 kb on + strand, within AO356_25960at 5868.413 kb on + strand, within AO356_25960at 5868.413 kb on + strand, within AO356_25960at 5868.414 kb on - strand, within AO356_25960at 5868.414 kb on - strand, within AO356_25960at 5868.414 kb on - strand, within AO356_25960at 5868.414 kb on - strand, within AO356_25960at 5868.414 kb on - strand, within AO356_25960at 5868.414 kb on - strand, within AO356_25960at 5868.421 kb on + strand, within AO356_25960at 5868.423 kb on + strand, within AO356_25960at 5868.423 kb on + strand, within AO356_25960at 5868.424 kb on - strand, within AO356_25960at 5868.424 kb on - strand, within AO356_25960at 5868.424 kb on - strand, within AO356_25960at 5868.431 kb on + strand, within AO356_25960at 5868.432 kb on - strand, within AO356_25960at 5868.432 kb on - strand, within AO356_25960at 5868.481 kb on + strand, within AO356_25960at 5868.481 kb on + strand, within AO356_25960at 5868.482 kb on - strand, within AO356_25960at 5868.543 kb on + strand, within AO356_25960at 5868.543 kb on + strand, within AO356_25960at 5868.544 kb on - strand, within AO356_25960at 5868.544 kb on - strand, within AO356_25960at 5868.544 kb on - strand, within AO356_25960at 5868.544 kb on - strand, within AO356_25960at 5868.634 kb on + strand, within AO356_25960at 5868.635 kb on - strand, within AO356_25960at 5868.716 kb on + strand, within AO356_25960at 5868.796 kb on - strand, within AO356_25960at 5868.796 kb on - strand, within AO356_25960at 5868.811 kb on + strand, within AO356_25960at 5868.811 kb on + strand, within AO356_25960at 5868.811 kb on + strand, within AO356_25960at 5868.812 kb on - strand, within AO356_25960at 5869.112 kb on + strand, within AO356_25960at 5869.149 kb on - strand, within AO356_25960at 5869.178 kb on + strandat 5869.179 kb on - strandat 5869.298 kb on + strandat 5869.882 kb on + strandat 5869.882 kb on + strandat 5869.883 kb on - strandat 5869.883 kb on - strandat 5870.166 kb on + strand, within AO356_25970at 5870.166 kb on + strand, within AO356_25970at 5870.166 kb on + strand, within AO356_25970at 5870.166 kb on + strand, within AO356_25970at 5870.167 kb on - strand, within AO356_25970at 5870.167 kb on - strand, within AO356_25970at 5870.177 kb on + strand, within AO356_25970at 5870.177 kb on + strand, within AO356_25970at 5870.178 kb on - strand, within AO356_25970at 5870.178 kb on - strand, within AO356_25970at 5870.213 kb on + strand, within AO356_25970at 5870.214 kb on - strand, within AO356_25970at 5870.214 kb on - strand, within AO356_25970at 5870.214 kb on - strand, within AO356_25970at 5870.238 kb on + strand, within AO356_25970at 5870.238 kb on + strand, within AO356_25970at 5870.591 kb on + strand, within AO356_25970at 5870.591 kb on + strand, within AO356_25970at 5870.591 kb on + strand, within AO356_25970at 5870.592 kb on - strand, within AO356_25970at 5870.592 kb on - strand, within AO356_25970

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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5,868,373 + AO356_25960 0.31 -0.4
5,868,373 + AO356_25960 0.31 +0.2
5,868,398 + AO356_25960 0.33 +1.9
5,868,398 + AO356_25960 0.33 +1.0
5,868,399 - AO356_25960 0.33 -0.9
5,868,413 + AO356_25960 0.34 +1.4
5,868,413 + AO356_25960 0.34 -0.8
5,868,413 + AO356_25960 0.34 +0.2
5,868,413 + AO356_25960 0.34 -0.7
5,868,414 - AO356_25960 0.34 +0.2
5,868,414 - AO356_25960 0.34 +0.6
5,868,414 - AO356_25960 0.34 +0.3
5,868,414 - AO356_25960 0.34 +0.5
5,868,414 - AO356_25960 0.34 +0.9
5,868,414 - AO356_25960 0.34 -0.4
5,868,421 + AO356_25960 0.35 +0.9
5,868,423 + AO356_25960 0.35 -1.1
5,868,423 + AO356_25960 0.35 +2.2
5,868,424 - AO356_25960 0.35 +0.0
5,868,424 - AO356_25960 0.35 +0.0
5,868,424 - AO356_25960 0.35 -2.1
5,868,431 + AO356_25960 0.36 +0.7
5,868,432 - AO356_25960 0.36 -2.8
5,868,432 - AO356_25960 0.36 +0.4
5,868,481 + AO356_25960 0.39 +1.9
5,868,481 + AO356_25960 0.39 -1.4
5,868,482 - AO356_25960 0.39 +0.0
5,868,543 + AO356_25960 0.44 -0.8
5,868,543 + AO356_25960 0.44 +3.4
5,868,544 - AO356_25960 0.44 +1.6
5,868,544 - AO356_25960 0.44 +0.9
5,868,544 - AO356_25960 0.44 +0.2
5,868,544 - AO356_25960 0.44 +1.5
5,868,634 + AO356_25960 0.51 -2.4
5,868,635 - AO356_25960 0.51 -1.4
5,868,716 + AO356_25960 0.57 +0.2
5,868,796 - AO356_25960 0.63 +0.9
5,868,796 - AO356_25960 0.63 -2.0
5,868,811 + AO356_25960 0.64 -1.4
5,868,811 + AO356_25960 0.64 +0.6
5,868,811 + AO356_25960 0.64 +0.3
5,868,812 - AO356_25960 0.64 +0.9
5,869,112 + AO356_25960 0.86 +0.8
5,869,149 - AO356_25960 0.89 -0.9
5,869,178 + +1.6
5,869,179 - +0.9
5,869,298 + -0.6
5,869,882 + -0.1
5,869,882 + -0.4
5,869,883 - -1.2
5,869,883 - +0.2
5,870,166 + AO356_25970 0.28 -1.5
5,870,166 + AO356_25970 0.28 +0.9
5,870,166 + AO356_25970 0.28 +0.6
5,870,166 + AO356_25970 0.28 +1.2
5,870,167 - AO356_25970 0.28 +0.5
5,870,167 - AO356_25970 0.28 +1.3
5,870,177 + AO356_25970 0.30 -2.1
5,870,177 + AO356_25970 0.30 +0.2
5,870,178 - AO356_25970 0.30 -3.0
5,870,178 - AO356_25970 0.30 -0.8
5,870,213 + AO356_25970 0.34 -0.5
5,870,214 - AO356_25970 0.34 +1.2
5,870,214 - AO356_25970 0.34 -0.4
5,870,214 - AO356_25970 0.34 -1.8
5,870,238 + AO356_25970 0.36 -0.4
5,870,238 + AO356_25970 0.36 +0.4
5,870,591 + AO356_25970 0.76 +1.8
5,870,591 + AO356_25970 0.76 -3.0
5,870,591 + AO356_25970 0.76 -0.8
5,870,592 - AO356_25970 0.76 +1.2
5,870,592 - AO356_25970 0.76 +0.8

Or see this region's nucleotide sequence