Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23440

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23430 and AO356_23435 are separated by 14 nucleotidesAO356_23435 and AO356_23440 overlap by 8 nucleotidesAO356_23440 and AO356_23445 are separated by 245 nucleotides AO356_23430: AO356_23430 - NAD-dependent deacetylase, at 5,254,131 to 5,254,886 _23430 AO356_23435: AO356_23435 - hypothetical protein, at 5,254,901 to 5,255,380 _23435 AO356_23440: AO356_23440 - calpastatin, at 5,255,373 to 5,255,801 _23440 AO356_23445: AO356_23445 - hypothetical protein, at 5,256,047 to 5,256,829 _23445 Position (kb) 5255 5256Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5254.678 kb on + strand, within AO356_23430at 5254.678 kb on + strand, within AO356_23430at 5254.678 kb on + strand, within AO356_23430at 5254.679 kb on - strand, within AO356_23430at 5254.909 kb on + strandat 5254.909 kb on + strandat 5254.909 kb on + strandat 5254.910 kb on - strandat 5254.910 kb on - strandat 5254.910 kb on - strandat 5254.910 kb on - strandat 5255.000 kb on + strand, within AO356_23435at 5255.000 kb on + strand, within AO356_23435at 5255.001 kb on - strand, within AO356_23435at 5255.078 kb on + strand, within AO356_23435at 5255.078 kb on + strand, within AO356_23435at 5255.097 kb on + strand, within AO356_23435at 5255.310 kb on + strand, within AO356_23435at 5255.311 kb on - strand, within AO356_23435at 5255.370 kb on + strandat 5255.374 kb on + strandat 5255.374 kb on + strandat 5255.374 kb on + strandat 5255.375 kb on - strandat 5255.375 kb on - strandat 5255.399 kb on + strandat 5255.399 kb on + strandat 5255.400 kb on - strandat 5255.400 kb on - strandat 5255.400 kb on - strandat 5255.403 kb on + strandat 5255.403 kb on + strandat 5255.404 kb on - strandat 5255.404 kb on - strandat 5255.456 kb on - strand, within AO356_23440at 5255.456 kb on - strand, within AO356_23440at 5255.647 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.650 kb on + strand, within AO356_23440at 5255.651 kb on - strand, within AO356_23440at 5255.651 kb on - strand, within AO356_23440at 5255.651 kb on - strand, within AO356_23440at 5255.682 kb on + strand, within AO356_23440at 5255.682 kb on + strand, within AO356_23440at 5255.733 kb on + strand, within AO356_23440at 5255.755 kb on + strand, within AO356_23440at 5255.755 kb on + strand, within AO356_23440at 5255.755 kb on + strand, within AO356_23440at 5255.756 kb on - strand, within AO356_23440at 5255.801 kb on + strandat 5255.801 kb on + strandat 5255.801 kb on + strandat 5255.801 kb on + strandat 5255.802 kb on - strandat 5255.900 kb on - strandat 5255.940 kb on + strandat 5255.940 kb on + strandat 5255.941 kb on - strandat 5255.941 kb on - strandat 5255.941 kb on - strandat 5255.942 kb on + strandat 5255.942 kb on + strandat 5255.942 kb on + strandat 5255.943 kb on - strandat 5255.957 kb on - strandat 5255.959 kb on - strandat 5255.986 kb on + strandat 5255.986 kb on + strandat 5255.986 kb on + strandat 5255.986 kb on + strandat 5255.986 kb on + strandat 5255.987 kb on - strandat 5256.025 kb on + strandat 5256.026 kb on - strandat 5256.423 kb on - strand, within AO356_23445at 5256.467 kb on + strand, within AO356_23445at 5256.468 kb on - strand, within AO356_23445at 5256.468 kb on - strand, within AO356_23445at 5256.468 kb on - strand, within AO356_23445at 5256.527 kb on + strand, within AO356_23445at 5256.590 kb on + strand, within AO356_23445at 5256.590 kb on + strand, within AO356_23445at 5256.634 kb on + strand, within AO356_23445at 5256.635 kb on - strand, within AO356_23445at 5256.735 kb on - strand, within AO356_23445

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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5,254,678 + AO356_23430 0.72 -0.6
5,254,678 + AO356_23430 0.72 +1.1
5,254,678 + AO356_23430 0.72 -1.3
5,254,679 - AO356_23430 0.72 +0.8
5,254,909 + +1.1
5,254,909 + -0.9
5,254,909 + -2.6
5,254,910 - +1.2
5,254,910 - -1.6
5,254,910 - +2.2
5,254,910 - -3.2
5,255,000 + AO356_23435 0.21 +1.8
5,255,000 + AO356_23435 0.21 +0.1
5,255,001 - AO356_23435 0.21 +0.7
5,255,078 + AO356_23435 0.37 +2.2
5,255,078 + AO356_23435 0.37 +0.8
5,255,097 + AO356_23435 0.41 +2.2
5,255,310 + AO356_23435 0.85 +0.8
5,255,311 - AO356_23435 0.85 +0.9
5,255,370 + +2.9
5,255,374 + +1.3
5,255,374 + -3.2
5,255,374 + +0.8
5,255,375 - +0.4
5,255,375 - +1.2
5,255,399 + -0.8
5,255,399 + -1.1
5,255,400 - +0.2
5,255,400 - +1.6
5,255,400 - -0.6
5,255,403 + +0.2
5,255,403 + -1.3
5,255,404 - -1.9
5,255,404 - +1.7
5,255,456 - AO356_23440 0.19 +2.0
5,255,456 - AO356_23440 0.19 -0.5
5,255,647 + AO356_23440 0.64 -1.8
5,255,650 + AO356_23440 0.65 -0.3
5,255,650 + AO356_23440 0.65 +0.5
5,255,650 + AO356_23440 0.65 +0.4
5,255,650 + AO356_23440 0.65 +0.1
5,255,651 - AO356_23440 0.65 +3.1
5,255,651 - AO356_23440 0.65 -1.2
5,255,651 - AO356_23440 0.65 -1.3
5,255,682 + AO356_23440 0.72 +0.5
5,255,682 + AO356_23440 0.72 -0.2
5,255,733 + AO356_23440 0.84 -0.9
5,255,755 + AO356_23440 0.89 +1.2
5,255,755 + AO356_23440 0.89 -2.1
5,255,755 + AO356_23440 0.89 +2.7
5,255,756 - AO356_23440 0.89 +0.9
5,255,801 + +1.2
5,255,801 + -0.9
5,255,801 + -2.1
5,255,801 + +0.3
5,255,802 - -1.6
5,255,900 - +0.1
5,255,940 + -2.6
5,255,940 + -1.1
5,255,941 - -2.2
5,255,941 - +0.8
5,255,941 - +1.5
5,255,942 + -0.5
5,255,942 + -0.5
5,255,942 + +0.7
5,255,943 - -2.2
5,255,957 - +0.8
5,255,959 - +2.7
5,255,986 + -1.2
5,255,986 + -1.4
5,255,986 + -0.5
5,255,986 + -3.1
5,255,986 + -2.9
5,255,987 - -0.3
5,256,025 + +0.2
5,256,026 - -1.9
5,256,423 - AO356_23445 0.48 -1.8
5,256,467 + AO356_23445 0.54 -1.1
5,256,468 - AO356_23445 0.54 -1.3
5,256,468 - AO356_23445 0.54 -0.4
5,256,468 - AO356_23445 0.54 -0.0
5,256,527 + AO356_23445 0.61 +0.4
5,256,590 + AO356_23445 0.69 +1.0
5,256,590 + AO356_23445 0.69 +1.0
5,256,634 + AO356_23445 0.75 +0.9
5,256,635 - AO356_23445 0.75 -2.9
5,256,735 - AO356_23445 0.88 -1.8

Or see this region's nucleotide sequence