Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22470 and AO356_22475 are separated by 56 nucleotides AO356_22475 and AO356_22480 are separated by 189 nucleotides
AO356_22470: AO356_22470 - type III effector, at 5,020,670 to 5,022,061
_22470
AO356_22475: AO356_22475 - MFS transporter, at 5,022,118 to 5,023,461
_22475
AO356_22480: AO356_22480 - oxidoreductase, at 5,023,651 to 5,025,216
_22480
Position (kb)
5022
5023
5024 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5021.118 kb on + strand, within AO356_22470 at 5021.118 kb on + strand, within AO356_22470 at 5021.119 kb on - strand, within AO356_22470 at 5021.167 kb on + strand, within AO356_22470 at 5021.214 kb on + strand, within AO356_22470 at 5021.332 kb on + strand, within AO356_22470 at 5021.332 kb on + strand, within AO356_22470 at 5021.332 kb on + strand, within AO356_22470 at 5021.332 kb on + strand, within AO356_22470 at 5021.332 kb on + strand, within AO356_22470 at 5021.332 kb on + strand, within AO356_22470 at 5021.332 kb on + strand, within AO356_22470 at 5021.332 kb on + strand, within AO356_22470 at 5021.332 kb on + strand, within AO356_22470 at 5021.332 kb on + strand, within AO356_22470 at 5021.333 kb on - strand, within AO356_22470 at 5021.333 kb on - strand, within AO356_22470 at 5021.333 kb on - strand, within AO356_22470 at 5021.333 kb on - strand, within AO356_22470 at 5021.333 kb on - strand, within AO356_22470 at 5021.333 kb on - strand, within AO356_22470 at 5021.368 kb on + strand, within AO356_22470 at 5021.369 kb on - strand, within AO356_22470 at 5021.369 kb on - strand, within AO356_22470 at 5021.414 kb on + strand, within AO356_22470 at 5021.415 kb on - strand, within AO356_22470 at 5021.452 kb on - strand, within AO356_22470 at 5021.452 kb on - strand, within AO356_22470 at 5021.460 kb on - strand, within AO356_22470 at 5021.460 kb on - strand, within AO356_22470 at 5021.460 kb on - strand, within AO356_22470 at 5021.615 kb on - strand, within AO356_22470 at 5021.637 kb on + strand, within AO356_22470 at 5021.638 kb on - strand, within AO356_22470 at 5021.638 kb on - strand, within AO356_22470 at 5021.810 kb on + strand, within AO356_22470 at 5021.810 kb on + strand, within AO356_22470 at 5021.830 kb on + strand, within AO356_22470 at 5021.857 kb on + strand, within AO356_22470 at 5021.858 kb on - strand, within AO356_22470 at 5021.858 kb on - strand, within AO356_22470 at 5021.859 kb on + strand, within AO356_22470 at 5021.859 kb on + strand, within AO356_22470 at 5021.859 kb on + strand, within AO356_22470 at 5021.860 kb on - strand, within AO356_22470 at 5021.872 kb on + strand, within AO356_22470 at 5021.872 kb on + strand, within AO356_22470 at 5021.872 kb on + strand, within AO356_22470 at 5021.872 kb on + strand, within AO356_22470 at 5022.029 kb on + strand at 5022.036 kb on + strand at 5022.053 kb on - strand at 5022.059 kb on + strand at 5022.059 kb on + strand at 5022.060 kb on - strand at 5022.092 kb on + strand at 5022.093 kb on - strand at 5022.093 kb on - strand at 5022.097 kb on - strand at 5022.117 kb on + strand at 5022.118 kb on - strand at 5022.118 kb on - strand at 5022.134 kb on + strand at 5022.139 kb on - strand at 5022.139 kb on - strand at 5022.163 kb on - strand at 5022.227 kb on + strand at 5022.227 kb on + strand at 5022.235 kb on + strand at 5022.235 kb on + strand at 5022.235 kb on + strand at 5022.236 kb on - strand at 5022.236 kb on - strand at 5022.244 kb on + strand at 5022.245 kb on - strand at 5022.250 kb on + strand at 5022.251 kb on - strand at 5022.401 kb on + strand, within AO356_22475 at 5022.421 kb on + strand, within AO356_22475 at 5022.421 kb on + strand, within AO356_22475 at 5022.421 kb on + strand, within AO356_22475 at 5022.474 kb on + strand, within AO356_22475 at 5022.474 kb on + strand, within AO356_22475 at 5022.474 kb on + strand, within AO356_22475 at 5022.474 kb on + strand, within AO356_22475 at 5022.475 kb on - strand, within AO356_22475 at 5022.475 kb on - strand, within AO356_22475 at 5022.475 kb on - strand, within AO356_22475 at 5022.479 kb on - strand, within AO356_22475 at 5022.479 kb on - strand, within AO356_22475 at 5022.488 kb on + strand, within AO356_22475 at 5022.488 kb on + strand, within AO356_22475 at 5022.489 kb on - strand, within AO356_22475 at 5022.557 kb on - strand, within AO356_22475 at 5022.557 kb on - strand, within AO356_22475 at 5022.557 kb on - strand, within AO356_22475 at 5022.578 kb on + strand, within AO356_22475 at 5022.578 kb on + strand, within AO356_22475 at 5022.579 kb on - strand, within AO356_22475 at 5022.579 kb on - strand, within AO356_22475 at 5022.579 kb on - strand, within AO356_22475 at 5022.613 kb on + strand, within AO356_22475 at 5022.613 kb on + strand, within AO356_22475 at 5022.614 kb on - strand, within AO356_22475 at 5022.689 kb on + strand, within AO356_22475 at 5022.689 kb on + strand, within AO356_22475 at 5022.689 kb on + strand, within AO356_22475 at 5022.689 kb on + strand, within AO356_22475 at 5022.709 kb on + strand, within AO356_22475 at 5022.710 kb on - strand, within AO356_22475 at 5022.710 kb on - strand, within AO356_22475 at 5022.711 kb on + strand, within AO356_22475 at 5022.711 kb on + strand, within AO356_22475 at 5022.712 kb on - strand, within AO356_22475 at 5022.877 kb on + strand, within AO356_22475 at 5022.877 kb on + strand, within AO356_22475 at 5022.877 kb on + strand, within AO356_22475 at 5022.878 kb on - strand, within AO356_22475 at 5022.878 kb on - strand, within AO356_22475 at 5022.878 kb on - strand, within AO356_22475 at 5022.882 kb on + strand, within AO356_22475 at 5022.882 kb on + strand, within AO356_22475 at 5022.883 kb on - strand, within AO356_22475 at 5022.890 kb on + strand, within AO356_22475 at 5022.962 kb on - strand, within AO356_22475 at 5022.962 kb on - strand, within AO356_22475 at 5023.016 kb on + strand, within AO356_22475 at 5023.016 kb on + strand, within AO356_22475 at 5023.016 kb on + strand, within AO356_22475 at 5023.016 kb on + strand, within AO356_22475 at 5023.016 kb on + strand, within AO356_22475 at 5023.016 kb on + strand, within AO356_22475 at 5023.016 kb on + strand, within AO356_22475 at 5023.017 kb on - strand, within AO356_22475 at 5023.017 kb on - strand, within AO356_22475 at 5023.017 kb on - strand, within AO356_22475 at 5023.017 kb on - strand, within AO356_22475 at 5023.017 kb on - strand, within AO356_22475 at 5023.020 kb on + strand, within AO356_22475 at 5023.020 kb on + strand, within AO356_22475 at 5023.020 kb on + strand, within AO356_22475 at 5023.021 kb on - strand, within AO356_22475 at 5023.021 kb on - strand, within AO356_22475 at 5023.038 kb on - strand, within AO356_22475 at 5023.038 kb on - strand, within AO356_22475 at 5023.143 kb on - strand, within AO356_22475 at 5023.143 kb on - strand, within AO356_22475 at 5023.164 kb on - strand, within AO356_22475 at 5023.213 kb on + strand, within AO356_22475 at 5023.213 kb on + strand, within AO356_22475 at 5023.213 kb on + strand, within AO356_22475 at 5023.214 kb on - strand, within AO356_22475 at 5023.214 kb on - strand, within AO356_22475 at 5023.214 kb on - strand, within AO356_22475 at 5023.351 kb on + strand at 5023.364 kb on - strand at 5023.364 kb on - strand at 5023.379 kb on - strand at 5023.417 kb on + strand at 5023.417 kb on + strand at 5023.418 kb on - strand at 5023.418 kb on - strand at 5023.460 kb on - strand at 5023.460 kb on - strand at 5023.533 kb on + strand at 5023.533 kb on + strand at 5023.534 kb on - strand at 5023.589 kb on + strand at 5023.589 kb on + strand at 5023.589 kb on + strand at 5023.589 kb on + strand at 5023.589 kb on + strand at 5023.589 kb on + strand at 5023.590 kb on - strand at 5023.590 kb on - strand at 5023.590 kb on - strand at 5023.590 kb on - strand at 5023.590 kb on - strand at 5023.591 kb on + strand at 5023.591 kb on + strand at 5023.591 kb on + strand at 5023.591 kb on + strand at 5023.592 kb on - strand at 5023.592 kb on - strand at 5023.592 kb on - strand at 5023.592 kb on - strand at 5023.592 kb on - strand at 5023.592 kb on - strand at 5023.619 kb on + strand at 5023.619 kb on + strand at 5023.619 kb on + strand at 5023.619 kb on + strand at 5023.619 kb on + strand at 5023.620 kb on - strand at 5023.620 kb on - strand at 5023.620 kb on - strand at 5023.632 kb on + strand at 5023.632 kb on + strand at 5023.633 kb on - strand at 5023.633 kb on - strand at 5023.652 kb on + strand at 5023.652 kb on + strand at 5023.734 kb on + strand at 5023.735 kb on - strand at 5023.796 kb on + strand at 5023.797 kb on - strand at 5023.869 kb on - strand, within AO356_22480 at 5023.869 kb on - strand, within AO356_22480 at 5024.237 kb on + strand, within AO356_22480 at 5024.285 kb on + strand, within AO356_22480 at 5024.285 kb on - strand, within AO356_22480 at 5024.296 kb on - strand, within AO356_22480 at 5024.296 kb on - strand, within AO356_22480
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 5,021,118 + AO356_22470 0.32 -1.3 5,021,118 + AO356_22470 0.32 +0.1 5,021,119 - AO356_22470 0.32 -0.7 5,021,167 + AO356_22470 0.36 +0.3 5,021,214 + AO356_22470 0.39 -0.5 5,021,332 + AO356_22470 0.48 +0.3 5,021,332 + AO356_22470 0.48 +1.3 5,021,332 + AO356_22470 0.48 +0.8 5,021,332 + AO356_22470 0.48 -0.1 5,021,332 + AO356_22470 0.48 -2.7 5,021,332 + AO356_22470 0.48 +1.6 5,021,332 + AO356_22470 0.48 +1.4 5,021,332 + AO356_22470 0.48 -2.0 5,021,332 + AO356_22470 0.48 -0.6 5,021,332 + AO356_22470 0.48 +0.6 5,021,333 - AO356_22470 0.48 -3.0 5,021,333 - AO356_22470 0.48 +0.9 5,021,333 - AO356_22470 0.48 +0.8 5,021,333 - AO356_22470 0.48 -2.7 5,021,333 - AO356_22470 0.48 -0.1 5,021,333 - AO356_22470 0.48 +1.4 5,021,368 + AO356_22470 0.50 -3.5 5,021,369 - AO356_22470 0.50 +1.0 5,021,369 - AO356_22470 0.50 +0.8 5,021,414 + AO356_22470 0.53 +0.3 5,021,415 - AO356_22470 0.54 +0.9 5,021,452 - AO356_22470 0.56 +1.1 5,021,452 - AO356_22470 0.56 +0.6 5,021,460 - AO356_22470 0.57 +0.9 5,021,460 - AO356_22470 0.57 +1.3 5,021,460 - AO356_22470 0.57 -0.2 5,021,615 - AO356_22470 0.68 -2.5 5,021,637 + AO356_22470 0.69 -1.4 5,021,638 - AO356_22470 0.70 +0.7 5,021,638 - AO356_22470 0.70 -1.7 5,021,810 + AO356_22470 0.82 +0.9 5,021,810 + AO356_22470 0.82 -2.3 5,021,830 + AO356_22470 0.83 +1.6 5,021,857 + AO356_22470 0.85 +1.3 5,021,858 - AO356_22470 0.85 +1.1 5,021,858 - AO356_22470 0.85 -0.0 5,021,859 + AO356_22470 0.85 -2.2 5,021,859 + AO356_22470 0.85 +0.9 5,021,859 + AO356_22470 0.85 -0.2 5,021,860 - AO356_22470 0.85 +1.1 5,021,872 + AO356_22470 0.86 +1.3 5,021,872 + AO356_22470 0.86 +0.0 5,021,872 + AO356_22470 0.86 -2.5 5,021,872 + AO356_22470 0.86 -2.3 5,022,029 + +0.0 5,022,036 + +0.4 5,022,053 - +0.6 5,022,059 + +0.6 5,022,059 + -0.5 5,022,060 - -2.9 5,022,092 + +0.3 5,022,093 - -0.2 5,022,093 - -0.7 5,022,097 - -1.1 5,022,117 + +0.9 5,022,118 - -0.7 5,022,118 - +1.5 5,022,134 + -0.5 5,022,139 - +1.6 5,022,139 - -0.1 5,022,163 - +0.3 5,022,227 + -1.8 5,022,227 + -2.3 5,022,235 + -0.9 5,022,235 + -1.3 5,022,235 + +1.1 5,022,236 - +0.6 5,022,236 - +1.1 5,022,244 + +0.0 5,022,245 - -3.3 5,022,250 + +1.3 5,022,251 - +1.0 5,022,401 + AO356_22475 0.21 -1.0 5,022,421 + AO356_22475 0.23 -3.2 5,022,421 + AO356_22475 0.23 -0.3 5,022,421 + AO356_22475 0.23 +0.6 5,022,474 + AO356_22475 0.26 +1.0 5,022,474 + AO356_22475 0.26 -2.7 5,022,474 + AO356_22475 0.26 +0.3 5,022,474 + AO356_22475 0.26 -0.5 5,022,475 - AO356_22475 0.27 +1.6 5,022,475 - AO356_22475 0.27 +1.3 5,022,475 - AO356_22475 0.27 -0.7 5,022,479 - AO356_22475 0.27 +0.5 5,022,479 - AO356_22475 0.27 +2.4 5,022,488 + AO356_22475 0.28 +1.4 5,022,488 + AO356_22475 0.28 +0.3 5,022,489 - AO356_22475 0.28 +1.8 5,022,557 - AO356_22475 0.33 +2.2 5,022,557 - AO356_22475 0.33 -1.7 5,022,557 - AO356_22475 0.33 +1.0 5,022,578 + AO356_22475 0.34 -0.8 5,022,578 + AO356_22475 0.34 -0.1 5,022,579 - AO356_22475 0.34 +2.1 5,022,579 - AO356_22475 0.34 -0.8 5,022,579 - AO356_22475 0.34 +0.9 5,022,613 + AO356_22475 0.37 -0.0 5,022,613 + AO356_22475 0.37 +1.1 5,022,614 - AO356_22475 0.37 +1.0 5,022,689 + AO356_22475 0.42 +1.6 5,022,689 + AO356_22475 0.42 +2.4 5,022,689 + AO356_22475 0.42 -2.9 5,022,689 + AO356_22475 0.42 -2.6 5,022,709 + AO356_22475 0.44 +1.7 5,022,710 - AO356_22475 0.44 -2.9 5,022,710 - AO356_22475 0.44 +0.1 5,022,711 + AO356_22475 0.44 -0.6 5,022,711 + AO356_22475 0.44 +1.7 5,022,712 - AO356_22475 0.44 -0.9 5,022,877 + AO356_22475 0.56 -2.5 5,022,877 + AO356_22475 0.56 +0.1 5,022,877 + AO356_22475 0.56 +1.6 5,022,878 - AO356_22475 0.57 +0.5 5,022,878 - AO356_22475 0.57 +0.1 5,022,878 - AO356_22475 0.57 +2.0 5,022,882 + AO356_22475 0.57 +1.7 5,022,882 + AO356_22475 0.57 +1.5 5,022,883 - AO356_22475 0.57 +0.6 5,022,890 + AO356_22475 0.57 +2.4 5,022,962 - AO356_22475 0.63 +0.3 5,022,962 - AO356_22475 0.63 +1.0 5,023,016 + AO356_22475 0.67 +0.2 5,023,016 + AO356_22475 0.67 +2.5 5,023,016 + AO356_22475 0.67 +0.9 5,023,016 + AO356_22475 0.67 -0.4 5,023,016 + AO356_22475 0.67 +1.8 5,023,016 + AO356_22475 0.67 -3.5 5,023,016 + AO356_22475 0.67 -1.1 5,023,017 - AO356_22475 0.67 -1.7 5,023,017 - AO356_22475 0.67 +0.3 5,023,017 - AO356_22475 0.67 +1.6 5,023,017 - AO356_22475 0.67 -0.7 5,023,017 - AO356_22475 0.67 -2.9 5,023,020 + AO356_22475 0.67 -2.3 5,023,020 + AO356_22475 0.67 +2.3 5,023,020 + AO356_22475 0.67 -3.0 5,023,021 - AO356_22475 0.67 -2.3 5,023,021 - AO356_22475 0.67 -2.5 5,023,038 - AO356_22475 0.68 +0.3 5,023,038 - AO356_22475 0.68 -0.5 5,023,143 - AO356_22475 0.76 +0.4 5,023,143 - AO356_22475 0.76 -2.1 5,023,164 - AO356_22475 0.78 -1.2 5,023,213 + AO356_22475 0.81 +1.4 5,023,213 + AO356_22475 0.81 -0.0 5,023,213 + AO356_22475 0.81 -0.9 5,023,214 - AO356_22475 0.82 +1.2 5,023,214 - AO356_22475 0.82 -3.2 5,023,214 - AO356_22475 0.82 +0.8 5,023,351 + +0.9 5,023,364 - +0.1 5,023,364 - +0.4 5,023,379 - +0.3 5,023,417 + +1.9 5,023,417 + +0.5 5,023,418 - -1.3 5,023,418 - -0.6 5,023,460 - +0.3 5,023,460 - -0.3 5,023,533 + -3.7 5,023,533 + -0.4 5,023,534 - +1.0 5,023,589 + -0.1 5,023,589 + +1.0 5,023,589 + +0.6 5,023,589 + +1.8 5,023,589 + +0.6 5,023,589 + -2.0 5,023,590 - -1.9 5,023,590 - +1.2 5,023,590 - +1.7 5,023,590 - -0.1 5,023,590 - +1.0 5,023,591 + -1.7 5,023,591 + +0.9 5,023,591 + -2.2 5,023,591 + +0.6 5,023,592 - +0.6 5,023,592 - +0.9 5,023,592 - +0.4 5,023,592 - -0.5 5,023,592 - -0.2 5,023,592 - +0.3 5,023,619 + +1.1 5,023,619 + +2.4 5,023,619 + +1.4 5,023,619 + +0.7 5,023,619 + -0.7 5,023,620 - +0.3 5,023,620 - -0.5 5,023,620 - -1.5 5,023,632 + -2.7 5,023,632 + -0.1 5,023,633 - -2.5 5,023,633 - -0.1 5,023,652 + -1.7 5,023,652 + -0.6 5,023,734 + +0.4 5,023,735 - -2.3 5,023,796 + -1.1 5,023,797 - -0.9 5,023,869 - AO356_22480 0.14 +1.1 5,023,869 - AO356_22480 0.14 -0.9 5,024,237 + AO356_22480 0.37 +1.2 5,024,285 + AO356_22480 0.40 -0.7 5,024,285 - AO356_22480 0.40 +0.0 5,024,296 - AO356_22480 0.41 +0.3 5,024,296 - AO356_22480 0.41 +0.8
Or see this region's nucleotide sequence