Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21975

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21965 and AO356_21970 overlap by 4 nucleotidesAO356_21970 and AO356_21975 overlap by 8 nucleotidesAO356_21975 and AO356_21980 are separated by 118 nucleotides AO356_21965: AO356_21965 - LysR family transcriptional regulator, at 4,917,465 to 4,918,412 _21965 AO356_21970: AO356_21970 - LysR family transcriptional regulator, at 4,918,409 to 4,918,822 _21970 AO356_21975: AO356_21975 - antibiotic biosynthesis monooxygenase, at 4,918,815 to 4,919,450 _21975 AO356_21980: AO356_21980 - amidohydrolase, at 4,919,569 to 4,921,407 _21980 Position (kb) 4918 4919 4920Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4917.930 kb on + strand, within AO356_21965at 4917.930 kb on + strand, within AO356_21965at 4917.930 kb on + strand, within AO356_21965at 4917.931 kb on - strand, within AO356_21965at 4917.931 kb on - strand, within AO356_21965at 4918.035 kb on + strand, within AO356_21965at 4918.036 kb on - strand, within AO356_21965at 4918.089 kb on - strand, within AO356_21965at 4918.207 kb on - strand, within AO356_21965at 4918.207 kb on - strand, within AO356_21965at 4918.517 kb on + strand, within AO356_21970at 4918.518 kb on - strand, within AO356_21970at 4918.743 kb on + strand, within AO356_21970at 4918.743 kb on + strand, within AO356_21970at 4918.744 kb on - strand, within AO356_21970at 4918.744 kb on - strand, within AO356_21970at 4918.747 kb on + strand, within AO356_21970at 4918.747 kb on + strand, within AO356_21970at 4918.748 kb on - strand, within AO356_21970at 4918.748 kb on - strand, within AO356_21970at 4918.755 kb on + strand, within AO356_21970at 4918.756 kb on - strand, within AO356_21970at 4918.927 kb on - strand, within AO356_21975at 4918.927 kb on - strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.311 kb on - strand, within AO356_21975at 4919.311 kb on - strand, within AO356_21975at 4919.311 kb on - strand, within AO356_21975at 4919.361 kb on + strand, within AO356_21975at 4919.361 kb on + strand, within AO356_21975at 4919.362 kb on - strand, within AO356_21975at 4919.362 kb on - strand, within AO356_21975at 4919.362 kb on - strand, within AO356_21975at 4919.362 kb on - strand, within AO356_21975at 4919.449 kb on - strandat 4919.547 kb on + strandat 4919.547 kb on + strandat 4919.548 kb on - strandat 4919.588 kb on + strandat 4919.797 kb on + strand, within AO356_21980at 4919.797 kb on + strand, within AO356_21980at 4919.797 kb on + strand, within AO356_21980at 4919.798 kb on - strand, within AO356_21980at 4919.798 kb on - strand, within AO356_21980at 4919.798 kb on - strand, within AO356_21980at 4919.798 kb on - strand, within AO356_21980at 4920.004 kb on + strand, within AO356_21980at 4920.005 kb on - strand, within AO356_21980at 4920.152 kb on - strand, within AO356_21980at 4920.190 kb on + strand, within AO356_21980at 4920.292 kb on + strand, within AO356_21980at 4920.292 kb on + strand, within AO356_21980at 4920.293 kb on - strand, within AO356_21980at 4920.346 kb on + strand, within AO356_21980at 4920.347 kb on - strand, within AO356_21980at 4920.347 kb on - strand, within AO356_21980

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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4,917,930 + AO356_21965 0.49 +0.3
4,917,930 + AO356_21965 0.49 +1.1
4,917,930 + AO356_21965 0.49 +1.5
4,917,931 - AO356_21965 0.49 +1.2
4,917,931 - AO356_21965 0.49 -1.9
4,918,035 + AO356_21965 0.60 +0.1
4,918,036 - AO356_21965 0.60 +0.3
4,918,089 - AO356_21965 0.66 +2.3
4,918,207 - AO356_21965 0.78 +1.6
4,918,207 - AO356_21965 0.78 -0.6
4,918,517 + AO356_21970 0.26 -1.7
4,918,518 - AO356_21970 0.26 +0.3
4,918,743 + AO356_21970 0.81 +0.3
4,918,743 + AO356_21970 0.81 -1.2
4,918,744 - AO356_21970 0.81 +0.3
4,918,744 - AO356_21970 0.81 -0.1
4,918,747 + AO356_21970 0.82 +2.1
4,918,747 + AO356_21970 0.82 +0.4
4,918,748 - AO356_21970 0.82 +0.3
4,918,748 - AO356_21970 0.82 -0.3
4,918,755 + AO356_21970 0.84 -0.7
4,918,756 - AO356_21970 0.84 -1.2
4,918,927 - AO356_21975 0.18 +1.5
4,918,927 - AO356_21975 0.18 -1.9
4,919,310 + AO356_21975 0.78 -2.3
4,919,310 + AO356_21975 0.78 -1.7
4,919,310 + AO356_21975 0.78 -2.7
4,919,310 + AO356_21975 0.78 +0.3
4,919,310 + AO356_21975 0.78 -1.0
4,919,310 + AO356_21975 0.78 +0.6
4,919,311 - AO356_21975 0.78 +0.6
4,919,311 - AO356_21975 0.78 -0.2
4,919,311 - AO356_21975 0.78 -0.9
4,919,361 + AO356_21975 0.86 -0.7
4,919,361 + AO356_21975 0.86 -0.7
4,919,362 - AO356_21975 0.86 +1.0
4,919,362 - AO356_21975 0.86 -0.9
4,919,362 - AO356_21975 0.86 -0.7
4,919,362 - AO356_21975 0.86 -0.0
4,919,449 - -0.5
4,919,547 + -1.7
4,919,547 + +0.5
4,919,548 - -1.3
4,919,588 + +1.3
4,919,797 + AO356_21980 0.12 +0.1
4,919,797 + AO356_21980 0.12 -1.2
4,919,797 + AO356_21980 0.12 +0.9
4,919,798 - AO356_21980 0.12 -3.2
4,919,798 - AO356_21980 0.12 +1.0
4,919,798 - AO356_21980 0.12 +0.0
4,919,798 - AO356_21980 0.12 +0.3
4,920,004 + AO356_21980 0.24 +1.1
4,920,005 - AO356_21980 0.24 +1.6
4,920,152 - AO356_21980 0.32 +1.1
4,920,190 + AO356_21980 0.34 -0.6
4,920,292 + AO356_21980 0.39 +0.6
4,920,292 + AO356_21980 0.39 +0.3
4,920,293 - AO356_21980 0.39 +1.3
4,920,346 + AO356_21980 0.42 -0.3
4,920,347 - AO356_21980 0.42 +0.8
4,920,347 - AO356_21980 0.42 +2.3

Or see this region's nucleotide sequence