Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19750

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19745 and AO356_19750 are separated by 146 nucleotidesAO356_19750 and AO356_19755 are separated by 130 nucleotides AO356_19745: AO356_19745 - heat-shock protein Hsp90, at 4,427,577 to 4,429,481 _19745 AO356_19750: AO356_19750 - dienelactone hydrolase, at 4,429,628 to 4,430,356 _19750 AO356_19755: AO356_19755 - pirin, at 4,430,487 to 4,431,347 _19755 Position (kb) 4429 4430 4431Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4428.706 kb on - strand, within AO356_19745at 4428.885 kb on + strand, within AO356_19745at 4428.885 kb on + strand, within AO356_19745at 4428.885 kb on + strand, within AO356_19745at 4428.886 kb on - strand, within AO356_19745at 4428.886 kb on - strand, within AO356_19745at 4428.886 kb on - strand, within AO356_19745at 4428.886 kb on - strand, within AO356_19745at 4428.889 kb on - strand, within AO356_19745at 4428.889 kb on - strand, within AO356_19745at 4428.906 kb on + strand, within AO356_19745at 4428.907 kb on - strand, within AO356_19745at 4428.984 kb on - strand, within AO356_19745at 4429.005 kb on + strand, within AO356_19745at 4429.005 kb on + strand, within AO356_19745at 4429.005 kb on + strand, within AO356_19745at 4429.005 kb on + strand, within AO356_19745at 4429.005 kb on + strand, within AO356_19745at 4429.006 kb on - strand, within AO356_19745at 4429.006 kb on - strand, within AO356_19745at 4429.437 kb on + strandat 4429.437 kb on + strandat 4429.438 kb on - strandat 4429.438 kb on - strandat 4429.438 kb on - strandat 4429.480 kb on - strandat 4429.547 kb on + strandat 4429.547 kb on + strandat 4429.547 kb on + strandat 4429.548 kb on - strandat 4429.548 kb on - strandat 4429.548 kb on - strandat 4429.562 kb on - strandat 4429.562 kb on - strandat 4429.658 kb on + strandat 4429.658 kb on + strandat 4429.659 kb on - strandat 4429.659 kb on - strandat 4429.679 kb on + strandat 4429.679 kb on + strandat 4429.679 kb on + strandat 4429.679 kb on + strandat 4429.680 kb on - strandat 4429.758 kb on + strand, within AO356_19750at 4429.806 kb on - strand, within AO356_19750at 4429.806 kb on - strand, within AO356_19750at 4429.829 kb on + strand, within AO356_19750at 4429.830 kb on - strand, within AO356_19750at 4429.918 kb on + strand, within AO356_19750at 4429.919 kb on - strand, within AO356_19750at 4430.080 kb on + strand, within AO356_19750at 4430.080 kb on + strand, within AO356_19750at 4430.081 kb on - strand, within AO356_19750at 4430.081 kb on - strand, within AO356_19750at 4430.226 kb on - strand, within AO356_19750at 4430.266 kb on + strand, within AO356_19750at 4430.267 kb on - strand, within AO356_19750at 4430.285 kb on + strandat 4430.286 kb on - strandat 4430.286 kb on - strandat 4430.286 kb on - strandat 4430.326 kb on + strandat 4430.326 kb on + strandat 4430.326 kb on + strandat 4430.326 kb on + strandat 4430.326 kb on + strandat 4430.327 kb on - strandat 4430.327 kb on - strandat 4430.410 kb on + strandat 4430.411 kb on - strandat 4430.411 kb on - strandat 4430.411 kb on - strandat 4430.423 kb on + strandat 4430.424 kb on - strandat 4430.488 kb on + strandat 4430.694 kb on + strand, within AO356_19755at 4430.694 kb on + strand, within AO356_19755at 4430.694 kb on + strand, within AO356_19755at 4430.695 kb on - strand, within AO356_19755at 4430.695 kb on - strand, within AO356_19755at 4430.695 kb on - strand, within AO356_19755at 4430.715 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.756 kb on - strand, within AO356_19755at 4430.756 kb on - strand, within AO356_19755at 4430.756 kb on - strand, within AO356_19755at 4430.756 kb on - strand, within AO356_19755at 4430.824 kb on + strand, within AO356_19755at 4430.824 kb on + strand, within AO356_19755at 4430.824 kb on + strand, within AO356_19755at 4430.825 kb on - strand, within AO356_19755at 4430.825 kb on - strand, within AO356_19755at 4430.944 kb on + strand, within AO356_19755at 4430.945 kb on - strand, within AO356_19755at 4430.945 kb on - strand, within AO356_19755at 4430.945 kb on - strand, within AO356_19755at 4430.965 kb on + strand, within AO356_19755at 4430.966 kb on - strand, within AO356_19755at 4431.151 kb on + strand, within AO356_19755at 4431.151 kb on + strand, within AO356_19755at 4431.151 kb on + strand, within AO356_19755at 4431.151 kb on + strand, within AO356_19755at 4431.151 kb on + strand, within AO356_19755at 4431.152 kb on - strand, within AO356_19755at 4431.152 kb on - strand, within AO356_19755at 4431.152 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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4,428,706 - AO356_19745 0.59 -1.3
4,428,885 + AO356_19745 0.69 +0.8
4,428,885 + AO356_19745 0.69 +3.7
4,428,885 + AO356_19745 0.69 +3.1
4,428,886 - AO356_19745 0.69 +2.7
4,428,886 - AO356_19745 0.69 +1.4
4,428,886 - AO356_19745 0.69 +1.7
4,428,886 - AO356_19745 0.69 +2.5
4,428,889 - AO356_19745 0.69 +1.7
4,428,889 - AO356_19745 0.69 +2.2
4,428,906 + AO356_19745 0.70 +2.2
4,428,907 - AO356_19745 0.70 +2.3
4,428,984 - AO356_19745 0.74 +3.7
4,429,005 + AO356_19745 0.75 +1.3
4,429,005 + AO356_19745 0.75 +1.6
4,429,005 + AO356_19745 0.75 +1.8
4,429,005 + AO356_19745 0.75 +2.1
4,429,005 + AO356_19745 0.75 +1.6
4,429,006 - AO356_19745 0.75 +2.0
4,429,006 - AO356_19745 0.75 +2.3
4,429,437 + +3.6
4,429,437 + +2.6
4,429,438 - +2.7
4,429,438 - +3.6
4,429,438 - +3.2
4,429,480 - +1.4
4,429,547 + +1.1
4,429,547 + +1.1
4,429,547 + +0.3
4,429,548 - +2.3
4,429,548 - +1.2
4,429,548 - +2.0
4,429,562 - +0.3
4,429,562 - +1.5
4,429,658 + +0.4
4,429,658 + +1.2
4,429,659 - -0.7
4,429,659 - -3.0
4,429,679 + +1.8
4,429,679 + -0.7
4,429,679 + +0.1
4,429,679 + -1.7
4,429,680 - +0.4
4,429,758 + AO356_19750 0.18 -0.3
4,429,806 - AO356_19750 0.24 -0.2
4,429,806 - AO356_19750 0.24 +0.9
4,429,829 + AO356_19750 0.28 +1.5
4,429,830 - AO356_19750 0.28 +0.0
4,429,918 + AO356_19750 0.40 -0.4
4,429,919 - AO356_19750 0.40 +0.1
4,430,080 + AO356_19750 0.62 +3.0
4,430,080 + AO356_19750 0.62 +0.7
4,430,081 - AO356_19750 0.62 +1.3
4,430,081 - AO356_19750 0.62 +2.2
4,430,226 - AO356_19750 0.82 -0.2
4,430,266 + AO356_19750 0.88 -2.7
4,430,267 - AO356_19750 0.88 +1.2
4,430,285 + +1.2
4,430,286 - -1.4
4,430,286 - -2.3
4,430,286 - +0.3
4,430,326 + +0.8
4,430,326 + +1.1
4,430,326 + +1.3
4,430,326 + -2.5
4,430,326 + +0.5
4,430,327 - +1.0
4,430,327 - +1.0
4,430,410 + +0.4
4,430,411 - -0.5
4,430,411 - +1.6
4,430,411 - +2.4
4,430,423 + +3.0
4,430,424 - +0.6
4,430,488 + +0.8
4,430,694 + AO356_19755 0.24 +0.5
4,430,694 + AO356_19755 0.24 -0.2
4,430,694 + AO356_19755 0.24 +2.6
4,430,695 - AO356_19755 0.24 -1.2
4,430,695 - AO356_19755 0.24 -0.1
4,430,695 - AO356_19755 0.24 +0.6
4,430,715 + AO356_19755 0.26 +0.3
4,430,755 + AO356_19755 0.31 -0.3
4,430,755 + AO356_19755 0.31 +1.0
4,430,755 + AO356_19755 0.31 +0.7
4,430,755 + AO356_19755 0.31 -0.7
4,430,755 + AO356_19755 0.31 +0.3
4,430,755 + AO356_19755 0.31 +1.3
4,430,756 - AO356_19755 0.31 -0.3
4,430,756 - AO356_19755 0.31 +0.9
4,430,756 - AO356_19755 0.31 -0.7
4,430,756 - AO356_19755 0.31 -2.3
4,430,824 + AO356_19755 0.39 -1.7
4,430,824 + AO356_19755 0.39 +0.3
4,430,824 + AO356_19755 0.39 +1.3
4,430,825 - AO356_19755 0.39 -3.0
4,430,825 - AO356_19755 0.39 -1.2
4,430,944 + AO356_19755 0.53 -1.0
4,430,945 - AO356_19755 0.53 -1.0
4,430,945 - AO356_19755 0.53 +0.3
4,430,945 - AO356_19755 0.53 +0.3
4,430,965 + AO356_19755 0.56 +0.8
4,430,966 - AO356_19755 0.56 +0.1
4,431,151 + AO356_19755 0.77 -2.3
4,431,151 + AO356_19755 0.77 +1.9
4,431,151 + AO356_19755 0.77 -0.8
4,431,151 + AO356_19755 0.77 +1.3
4,431,151 + AO356_19755 0.77 -1.3
4,431,152 - AO356_19755 0.77 +4.4
4,431,152 - AO356_19755 0.77 +0.7
4,431,152 - -0.7

Or see this region's nucleotide sequence