Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13330

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13325 and AO356_13330 overlap by 8 nucleotidesAO356_13330 and AO356_13340 are separated by 343 nucleotides AO356_13325: AO356_13325 - peptidase M16, at 3,028,300 to 3,029,790 _13325 AO356_13330: AO356_13330 - peptidase M16, at 3,029,783 to 3,031,138 _13330 AO356_13340: AO356_13340 - signal recognition particle-docking protein FtsY, at 3,031,482 to 3,032,915 _13340 Position (kb) 3029 3030 3031 3032Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3028.838 kb on + strand, within AO356_13325at 3028.838 kb on + strand, within AO356_13325at 3028.839 kb on - strand, within AO356_13325at 3029.060 kb on + strand, within AO356_13325at 3029.060 kb on + strand, within AO356_13325at 3029.060 kb on + strand, within AO356_13325at 3029.061 kb on - strand, within AO356_13325at 3029.141 kb on + strand, within AO356_13325at 3029.141 kb on + strand, within AO356_13325at 3029.141 kb on + strand, within AO356_13325at 3029.141 kb on + strand, within AO356_13325at 3029.142 kb on - strand, within AO356_13325at 3029.142 kb on - strand, within AO356_13325at 3029.142 kb on - strand, within AO356_13325at 3029.142 kb on - strand, within AO356_13325at 3029.142 kb on - strand, within AO356_13325at 3029.210 kb on + strand, within AO356_13325at 3029.714 kb on + strandat 3029.714 kb on + strandat 3029.714 kb on + strandat 3029.714 kb on + strandat 3029.714 kb on + strandat 3029.714 kb on + strandat 3029.715 kb on - strandat 3029.715 kb on - strandat 3029.747 kb on - strandat 3029.844 kb on + strandat 3029.844 kb on + strandat 3029.844 kb on + strandat 3029.845 kb on - strandat 3029.845 kb on - strandat 3029.845 kb on - strandat 3029.985 kb on + strand, within AO356_13330at 3029.985 kb on + strand, within AO356_13330at 3029.985 kb on + strand, within AO356_13330at 3029.985 kb on + strand, within AO356_13330at 3029.985 kb on + strand, within AO356_13330at 3029.985 kb on + strand, within AO356_13330at 3029.985 kb on + strand, within AO356_13330at 3029.986 kb on - strand, within AO356_13330at 3029.986 kb on - strand, within AO356_13330at 3029.986 kb on - strand, within AO356_13330at 3029.986 kb on - strand, within AO356_13330at 3030.168 kb on + strand, within AO356_13330at 3030.169 kb on - strand, within AO356_13330at 3030.169 kb on - strand, within AO356_13330at 3030.169 kb on - strand, within AO356_13330at 3030.169 kb on - strand, within AO356_13330at 3030.169 kb on - strand, within AO356_13330at 3030.169 kb on - strand, within AO356_13330at 3030.235 kb on - strand, within AO356_13330at 3030.442 kb on - strand, within AO356_13330at 3030.442 kb on - strand, within AO356_13330at 3030.516 kb on + strand, within AO356_13330at 3030.516 kb on + strand, within AO356_13330at 3030.516 kb on + strand, within AO356_13330at 3030.516 kb on + strand, within AO356_13330at 3030.528 kb on + strand, within AO356_13330at 3030.528 kb on + strand, within AO356_13330at 3030.528 kb on + strand, within AO356_13330at 3030.529 kb on - strand, within AO356_13330at 3030.529 kb on - strand, within AO356_13330at 3030.529 kb on - strand, within AO356_13330at 3030.529 kb on - strand, within AO356_13330at 3030.636 kb on + strand, within AO356_13330at 3030.637 kb on - strand, within AO356_13330at 3030.795 kb on + strand, within AO356_13330at 3030.795 kb on + strand, within AO356_13330at 3030.795 kb on + strand, within AO356_13330at 3030.796 kb on - strand, within AO356_13330at 3030.798 kb on + strand, within AO356_13330at 3030.798 kb on + strand, within AO356_13330at 3030.799 kb on - strand, within AO356_13330at 3030.799 kb on - strand, within AO356_13330at 3030.799 kb on - strand, within AO356_13330at 3030.948 kb on + strand, within AO356_13330at 3030.949 kb on - strand, within AO356_13330at 3030.966 kb on + strand, within AO356_13330at 3030.966 kb on + strand, within AO356_13330at 3030.967 kb on - strand, within AO356_13330at 3030.967 kb on - strand, within AO356_13330at 3030.967 kb on - strand, within AO356_13330at 3031.146 kb on + strandat 3031.147 kb on - strandat 3031.167 kb on + strandat 3031.167 kb on + strandat 3031.167 kb on + strandat 3031.168 kb on - strandat 3031.168 kb on - strandat 3031.168 kb on - strandat 3031.168 kb on - strandat 3031.168 kb on - strandat 3031.168 kb on - strandat 3031.168 kb on - strandat 3031.174 kb on + strandat 3031.198 kb on + strandat 3031.198 kb on + strandat 3031.198 kb on + strandat 3031.198 kb on + strandat 3031.198 kb on + strandat 3031.203 kb on + strandat 3031.244 kb on + strandat 3031.426 kb on + strandat 3031.426 kb on + strandat 3031.426 kb on + strandat 3031.426 kb on + strandat 3031.426 kb on + strandat 3031.426 kb on + strandat 3031.430 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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3,028,838 + AO356_13325 0.36 -0.6
3,028,838 + AO356_13325 0.36 +0.4
3,028,839 - AO356_13325 0.36 -0.1
3,029,060 + AO356_13325 0.51 -1.2
3,029,060 + AO356_13325 0.51 +1.0
3,029,060 + AO356_13325 0.51 -0.6
3,029,061 - AO356_13325 0.51 +1.9
3,029,141 + AO356_13325 0.56 +0.6
3,029,141 + AO356_13325 0.56 -0.0
3,029,141 + AO356_13325 0.56 +0.3
3,029,141 + AO356_13325 0.56 -2.2
3,029,142 - AO356_13325 0.56 -1.0
3,029,142 - AO356_13325 0.56 +0.2
3,029,142 - AO356_13325 0.56 -1.2
3,029,142 - AO356_13325 0.56 +0.9
3,029,142 - AO356_13325 0.56 +1.0
3,029,210 + AO356_13325 0.61 -0.9
3,029,714 + -0.6
3,029,714 + +0.4
3,029,714 + +1.2
3,029,714 + -1.1
3,029,714 + -1.1
3,029,714 + +0.2
3,029,715 - -0.5
3,029,715 - +0.7
3,029,747 - -1.2
3,029,844 + -3.1
3,029,844 + -0.0
3,029,844 + +1.6
3,029,845 - +0.4
3,029,845 - +1.1
3,029,845 - +0.9
3,029,985 + AO356_13330 0.15 +1.4
3,029,985 + AO356_13330 0.15 +0.8
3,029,985 + AO356_13330 0.15 -0.1
3,029,985 + AO356_13330 0.15 +0.1
3,029,985 + AO356_13330 0.15 +0.3
3,029,985 + AO356_13330 0.15 -0.0
3,029,985 + AO356_13330 0.15 +1.7
3,029,986 - AO356_13330 0.15 -1.2
3,029,986 - AO356_13330 0.15 +1.6
3,029,986 - AO356_13330 0.15 +0.4
3,029,986 - AO356_13330 0.15 -0.2
3,030,168 + AO356_13330 0.28 -3.4
3,030,169 - AO356_13330 0.28 -1.1
3,030,169 - AO356_13330 0.28 -0.3
3,030,169 - AO356_13330 0.28 -2.5
3,030,169 - AO356_13330 0.28 -2.3
3,030,169 - AO356_13330 0.28 -1.5
3,030,169 - AO356_13330 0.28 -1.8
3,030,235 - AO356_13330 0.33 +1.4
3,030,442 - AO356_13330 0.49 -2.1
3,030,442 - AO356_13330 0.49 -1.2
3,030,516 + AO356_13330 0.54 -0.6
3,030,516 + AO356_13330 0.54 -0.6
3,030,516 + AO356_13330 0.54 -2.8
3,030,516 + AO356_13330 0.54 +2.6
3,030,528 + AO356_13330 0.55 -0.6
3,030,528 + AO356_13330 0.55 -1.8
3,030,528 + AO356_13330 0.55 -1.2
3,030,529 - AO356_13330 0.55 -1.7
3,030,529 - AO356_13330 0.55 -0.2
3,030,529 - AO356_13330 0.55 +1.0
3,030,529 - AO356_13330 0.55 -1.0
3,030,636 + AO356_13330 0.63 -1.9
3,030,637 - AO356_13330 0.63 +1.4
3,030,795 + AO356_13330 0.75 -2.7
3,030,795 + AO356_13330 0.75 -2.8
3,030,795 + AO356_13330 0.75 -1.2
3,030,796 - AO356_13330 0.75 +0.3
3,030,798 + AO356_13330 0.75 -2.4
3,030,798 + AO356_13330 0.75 +3.0
3,030,799 - AO356_13330 0.75 -0.6
3,030,799 - AO356_13330 0.75 -3.7
3,030,799 - AO356_13330 0.75 +0.1
3,030,948 + AO356_13330 0.86 +2.7
3,030,949 - AO356_13330 0.86 +0.0
3,030,966 + AO356_13330 0.87 +1.4
3,030,966 + AO356_13330 0.87 -0.1
3,030,967 - AO356_13330 0.87 -1.6
3,030,967 - AO356_13330 0.87 +2.3
3,030,967 - AO356_13330 0.87 +0.5
3,031,146 + +0.5
3,031,147 - -2.9
3,031,167 + -0.0
3,031,167 + +1.2
3,031,167 + -0.0
3,031,168 - -1.9
3,031,168 - +0.1
3,031,168 - -1.2
3,031,168 - +1.1
3,031,168 - +2.3
3,031,168 - +1.7
3,031,168 - +1.5
3,031,174 + -1.9
3,031,198 + -1.9
3,031,198 + +0.1
3,031,198 + -0.2
3,031,198 + -0.3
3,031,198 + -0.6
3,031,203 + -2.2
3,031,244 + +1.0
3,031,426 + +0.6
3,031,426 + -1.9
3,031,426 + -1.9
3,031,426 + +0.5
3,031,426 + +0.8
3,031,426 + +0.6
3,031,430 + +0.9

Or see this region's nucleotide sequence