Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10190

Experiment: copper (II) chloride 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_10185 and AO356_10190 are separated by 249 nucleotidesAO356_10190 and AO356_10195 are separated by 20 nucleotidesAO356_10195 and AO356_10200 overlap by 4 nucleotides AO356_10185: AO356_10185 - glutamate--cysteine ligase, at 2,297,998 to 2,299,581 _10185 AO356_10190: AO356_10190 - taurine ABC transporter substrate-binding protein, at 2,299,831 to 2,300,808 _10190 AO356_10195: AO356_10195 - taurine transporter ATP-binding subunit, at 2,300,829 to 2,301,623 _10195 AO356_10200: AO356_10200 - taurine ABC transporter permease, at 2,301,620 to 2,302,459 _10200 Position (kb) 2299 2300 2301Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2298.868 kb on - strand, within AO356_10185at 2298.895 kb on + strand, within AO356_10185at 2298.895 kb on + strand, within AO356_10185at 2298.895 kb on + strand, within AO356_10185at 2298.896 kb on - strand, within AO356_10185at 2298.899 kb on - strand, within AO356_10185at 2298.928 kb on + strand, within AO356_10185at 2298.928 kb on + strand, within AO356_10185at 2298.929 kb on - strand, within AO356_10185at 2298.976 kb on + strand, within AO356_10185at 2298.977 kb on - strand, within AO356_10185at 2299.066 kb on + strand, within AO356_10185at 2299.066 kb on + strand, within AO356_10185at 2299.066 kb on + strand, within AO356_10185at 2299.067 kb on - strand, within AO356_10185at 2299.067 kb on - strand, within AO356_10185at 2299.575 kb on + strandat 2299.575 kb on + strandat 2299.576 kb on - strandat 2299.576 kb on - strandat 2299.576 kb on - strandat 2299.783 kb on - strandat 2299.970 kb on - strand, within AO356_10190at 2300.184 kb on + strand, within AO356_10190at 2300.184 kb on + strand, within AO356_10190at 2300.185 kb on - strand, within AO356_10190at 2300.245 kb on + strand, within AO356_10190at 2300.246 kb on - strand, within AO356_10190at 2300.362 kb on + strand, within AO356_10190at 2300.362 kb on + strand, within AO356_10190at 2300.362 kb on + strand, within AO356_10190at 2300.362 kb on + strand, within AO356_10190at 2300.362 kb on + strand, within AO356_10190at 2300.363 kb on - strand, within AO356_10190at 2300.363 kb on - strand, within AO356_10190at 2300.363 kb on - strand, within AO356_10190at 2300.363 kb on - strand, within AO356_10190at 2300.363 kb on - strand, within AO356_10190at 2300.363 kb on - strand, within AO356_10190at 2300.536 kb on + strand, within AO356_10190at 2300.628 kb on + strand, within AO356_10190at 2300.639 kb on + strand, within AO356_10190at 2300.640 kb on - strand, within AO356_10190at 2300.770 kb on + strandat 2300.771 kb on - strandat 2300.779 kb on + strandat 2300.779 kb on + strandat 2300.780 kb on - strandat 2300.780 kb on - strandat 2300.794 kb on + strandat 2300.794 kb on + strandat 2300.794 kb on + strandat 2300.794 kb on + strandat 2300.794 kb on + strandat 2300.794 kb on + strandat 2300.794 kb on + strandat 2300.794 kb on + strandat 2300.794 kb on + strandat 2300.794 kb on + strandat 2300.795 kb on - strandat 2300.795 kb on - strandat 2300.795 kb on - strandat 2300.795 kb on - strandat 2300.795 kb on - strandat 2300.795 kb on - strandat 2300.839 kb on + strandat 2300.865 kb on + strandat 2300.897 kb on + strandat 2300.897 kb on + strandat 2300.898 kb on - strandat 2300.898 kb on - strandat 2300.898 kb on - strandat 2301.629 kb on + strandat 2301.629 kb on + strandat 2301.630 kb on - strandat 2301.701 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
remove
2,298,868 - AO356_10185 0.55 -0.1
2,298,895 + AO356_10185 0.57 -1.1
2,298,895 + AO356_10185 0.57 -0.5
2,298,895 + AO356_10185 0.57 -1.1
2,298,896 - AO356_10185 0.57 -1.1
2,298,899 - AO356_10185 0.57 -0.5
2,298,928 + AO356_10185 0.59 -2.1
2,298,928 + AO356_10185 0.59 -0.9
2,298,929 - AO356_10185 0.59 -1.5
2,298,976 + AO356_10185 0.62 -1.9
2,298,977 - AO356_10185 0.62 -1.5
2,299,066 + AO356_10185 0.67 -1.5
2,299,066 + AO356_10185 0.67 -0.5
2,299,066 + AO356_10185 0.67 +0.5
2,299,067 - AO356_10185 0.67 -1.1
2,299,067 - AO356_10185 0.67 -1.1
2,299,575 + -0.2
2,299,575 + -0.0
2,299,576 - +1.2
2,299,576 - +0.9
2,299,576 - +1.1
2,299,783 - +1.3
2,299,970 - AO356_10190 0.14 +1.3
2,300,184 + AO356_10190 0.36 +0.2
2,300,184 + AO356_10190 0.36 +1.0
2,300,185 - AO356_10190 0.36 +1.1
2,300,245 + AO356_10190 0.42 +0.5
2,300,246 - AO356_10190 0.42 +1.1
2,300,362 + AO356_10190 0.54 +1.9
2,300,362 + AO356_10190 0.54 -2.1
2,300,362 + AO356_10190 0.54 -1.9
2,300,362 + AO356_10190 0.54 -0.9
2,300,362 + AO356_10190 0.54 +1.2
2,300,363 - AO356_10190 0.54 -0.2
2,300,363 - AO356_10190 0.54 +1.0
2,300,363 - AO356_10190 0.54 +1.1
2,300,363 - AO356_10190 0.54 -1.0
2,300,363 - AO356_10190 0.54 +0.4
2,300,363 - AO356_10190 0.54 -1.7
2,300,536 + AO356_10190 0.72 +0.9
2,300,628 + AO356_10190 0.81 -1.4
2,300,639 + AO356_10190 0.83 +2.5
2,300,640 - AO356_10190 0.83 +2.3
2,300,770 + -2.4
2,300,771 - +2.2
2,300,779 + +1.6
2,300,779 + +0.3
2,300,780 - +1.1
2,300,780 - -0.6
2,300,794 + +2.2
2,300,794 + +0.5
2,300,794 + +1.5
2,300,794 + -0.7
2,300,794 + +2.2
2,300,794 + -2.2
2,300,794 + +1.9
2,300,794 + -3.2
2,300,794 + +1.5
2,300,794 + +0.5
2,300,795 - +1.2
2,300,795 - -2.4
2,300,795 - -3.0
2,300,795 - -0.0
2,300,795 - +2.3
2,300,795 - +0.3
2,300,839 + -0.2
2,300,865 + -1.9
2,300,897 + -3.0
2,300,897 + -1.0
2,300,898 - +0.3
2,300,898 - +0.3
2,300,898 - +0.1
2,301,629 + -0.0
2,301,629 + -1.9
2,301,630 - -0.4
2,301,701 - -0.2

Or see this region's nucleotide sequence