Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10180

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10175 and AO356_10180 overlap by 1 nucleotidesAO356_10180 and AO356_10185 are separated by 269 nucleotides AO356_10175: AO356_10175 - transcription accessory protein, at 2,295,021 to 2,297,345 _10175 AO356_10180: AO356_10180 - hypothetical protein, at 2,297,345 to 2,297,728 _10180 AO356_10185: AO356_10185 - glutamate--cysteine ligase, at 2,297,998 to 2,299,581 _10185 Position (kb) 2297 2298Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2296.422 kb on + strand, within AO356_10175at 2296.731 kb on + strand, within AO356_10175at 2297.585 kb on + strand, within AO356_10180at 2297.585 kb on + strand, within AO356_10180at 2297.585 kb on + strand, within AO356_10180at 2297.585 kb on + strand, within AO356_10180at 2297.585 kb on + strand, within AO356_10180at 2297.586 kb on - strand, within AO356_10180at 2297.586 kb on - strand, within AO356_10180at 2297.724 kb on + strandat 2297.724 kb on + strandat 2297.724 kb on + strandat 2297.724 kb on + strandat 2297.724 kb on + strandat 2297.724 kb on + strandat 2297.724 kb on + strandat 2297.724 kb on + strandat 2297.725 kb on - strandat 2297.725 kb on - strandat 2297.725 kb on - strandat 2297.725 kb on - strandat 2297.725 kb on - strandat 2297.725 kb on - strandat 2297.725 kb on - strandat 2297.726 kb on + strandat 2297.726 kb on + strandat 2297.726 kb on + strandat 2297.726 kb on + strandat 2297.726 kb on + strandat 2297.726 kb on + strandat 2297.726 kb on + strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.727 kb on - strandat 2297.751 kb on - strandat 2297.929 kb on + strandat 2297.943 kb on + strandat 2297.943 kb on + strandat 2297.944 kb on - strandat 2297.944 kb on - strandat 2297.944 kb on - strandat 2298.011 kb on + strandat 2298.012 kb on - strandat 2298.185 kb on - strand, within AO356_10185at 2298.295 kb on + strand, within AO356_10185at 2298.296 kb on - strand, within AO356_10185at 2298.296 kb on - strand, within AO356_10185at 2298.296 kb on - strand, within AO356_10185at 2298.296 kb on - strand, within AO356_10185at 2298.355 kb on + strand, within AO356_10185at 2298.359 kb on - strand, within AO356_10185at 2298.359 kb on - strand, within AO356_10185at 2298.388 kb on + strand, within AO356_10185at 2298.388 kb on + strand, within AO356_10185at 2298.388 kb on + strand, within AO356_10185at 2298.388 kb on + strand, within AO356_10185at 2298.388 kb on + strand, within AO356_10185at 2298.388 kb on + strand, within AO356_10185at 2298.389 kb on - strand, within AO356_10185at 2298.389 kb on - strand, within AO356_10185at 2298.389 kb on - strand, within AO356_10185at 2298.395 kb on - strand, within AO356_10185at 2298.455 kb on - strand, within AO356_10185at 2298.544 kb on + strand, within AO356_10185at 2298.544 kb on + strand, within AO356_10185at 2298.544 kb on + strand, within AO356_10185at 2298.544 kb on + strand, within AO356_10185at 2298.545 kb on - strand, within AO356_10185at 2298.592 kb on + strand, within AO356_10185at 2298.593 kb on - strand, within AO356_10185at 2298.593 kb on - strand, within AO356_10185at 2298.593 kb on - strand, within AO356_10185at 2298.679 kb on + strand, within AO356_10185at 2298.680 kb on - strand, within AO356_10185

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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2,296,422 + AO356_10175 0.60 -1.1
2,296,731 + AO356_10175 0.74 +0.9
2,297,585 + AO356_10180 0.62 -1.9
2,297,585 + AO356_10180 0.62 -0.1
2,297,585 + AO356_10180 0.62 +1.7
2,297,585 + AO356_10180 0.62 -1.7
2,297,585 + AO356_10180 0.62 +1.1
2,297,586 - AO356_10180 0.63 -1.5
2,297,586 - AO356_10180 0.63 +0.9
2,297,724 + +1.3
2,297,724 + -0.2
2,297,724 + +1.7
2,297,724 + -1.1
2,297,724 + -0.5
2,297,724 + -2.5
2,297,724 + -1.4
2,297,724 + -1.1
2,297,725 - +0.0
2,297,725 - -1.0
2,297,725 - -0.4
2,297,725 - +0.5
2,297,725 - +1.4
2,297,725 - -0.2
2,297,725 - +0.7
2,297,726 + +0.3
2,297,726 + -2.7
2,297,726 + -3.4
2,297,726 + +0.9
2,297,726 + -1.9
2,297,726 + +0.5
2,297,726 + -1.9
2,297,727 - +0.1
2,297,727 - +1.5
2,297,727 - +0.5
2,297,727 - +0.7
2,297,727 - -0.8
2,297,727 - +0.6
2,297,727 - +0.9
2,297,727 - -0.9
2,297,727 - +0.7
2,297,727 - -1.1
2,297,727 - -2.0
2,297,727 - -1.5
2,297,727 - -2.4
2,297,727 - -1.7
2,297,751 - +3.2
2,297,929 + -3.6
2,297,943 + +1.3
2,297,943 + -2.7
2,297,944 - +0.6
2,297,944 - +2.2
2,297,944 - +2.1
2,298,011 + -0.9
2,298,012 - +0.9
2,298,185 - AO356_10185 0.12 -0.5
2,298,295 + AO356_10185 0.19 -0.9
2,298,296 - AO356_10185 0.19 +0.8
2,298,296 - AO356_10185 0.19 -2.5
2,298,296 - AO356_10185 0.19 -1.9
2,298,296 - AO356_10185 0.19 -1.1
2,298,355 + AO356_10185 0.23 -0.5
2,298,359 - AO356_10185 0.23 -1.9
2,298,359 - AO356_10185 0.23 -1.1
2,298,388 + AO356_10185 0.25 -0.5
2,298,388 + AO356_10185 0.25 -1.9
2,298,388 + AO356_10185 0.25 +1.5
2,298,388 + AO356_10185 0.25 -1.5
2,298,388 + AO356_10185 0.25 -1.5
2,298,388 + AO356_10185 0.25 -0.1
2,298,389 - AO356_10185 0.25 -0.5
2,298,389 - AO356_10185 0.25 -0.5
2,298,389 - AO356_10185 0.25 -1.1
2,298,395 - AO356_10185 0.25 +0.5
2,298,455 - AO356_10185 0.29 -1.1
2,298,544 + AO356_10185 0.34 -0.1
2,298,544 + AO356_10185 0.34 -1.1
2,298,544 + AO356_10185 0.34 +0.5
2,298,544 + AO356_10185 0.34 -2.4
2,298,545 - AO356_10185 0.35 -1.1
2,298,592 + AO356_10185 0.38 -0.5
2,298,593 - AO356_10185 0.38 +1.5
2,298,593 - AO356_10185 0.38 -0.1
2,298,593 - AO356_10185 0.38 -2.4
2,298,679 + AO356_10185 0.43 -2.4
2,298,680 - AO356_10185 0.43 -0.1

Or see this region's nucleotide sequence