Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07715

Experiment: copper (II) chloride 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_07705 and AO356_07710 overlap by 4 nucleotidesAO356_07710 and AO356_07715 overlap by 4 nucleotidesAO356_07715 and AO356_07720 overlap by 4 nucleotidesAO356_07720 and AO356_07725 are separated by 28 nucleotides AO356_07705: AO356_07705 - ABC transporter permease, at 1,711,834 to 1,712,781 _07705 AO356_07710: AO356_07710 - nickel ABC transporter permease, at 1,712,778 to 1,713,635 _07710 AO356_07715: AO356_07715 - methionine ABC transporter ATP-binding protein, at 1,713,632 to 1,714,618 _07715 AO356_07720: AO356_07720 - ABC transporter ATP-binding protein, at 1,714,615 to 1,715,586 _07720 AO356_07725: AO356_07725 - diguanylate cyclase, at 1,715,615 to 1,717,129 _07725 Position (kb) 1713 1714 1715Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1712.671 kb on + strand, within AO356_07705at 1712.671 kb on + strand, within AO356_07705at 1712.671 kb on + strand, within AO356_07705at 1712.671 kb on + strand, within AO356_07705at 1712.672 kb on - strand, within AO356_07705at 1712.946 kb on - strand, within AO356_07710at 1713.111 kb on + strand, within AO356_07710at 1713.111 kb on + strand, within AO356_07710at 1713.112 kb on - strand, within AO356_07710at 1713.156 kb on - strand, within AO356_07710at 1713.158 kb on + strand, within AO356_07710at 1713.158 kb on + strand, within AO356_07710at 1713.231 kb on + strand, within AO356_07710at 1713.231 kb on + strand, within AO356_07710at 1713.231 kb on + strand, within AO356_07710at 1713.232 kb on - strand, within AO356_07710at 1713.232 kb on - strand, within AO356_07710at 1713.264 kb on + strand, within AO356_07710at 1713.264 kb on + strand, within AO356_07710at 1713.264 kb on + strand, within AO356_07710at 1713.265 kb on - strand, within AO356_07710at 1713.265 kb on - strand, within AO356_07710at 1713.265 kb on - strand, within AO356_07710at 1713.427 kb on + strand, within AO356_07710at 1713.453 kb on + strand, within AO356_07710at 1713.454 kb on - strand, within AO356_07710at 1713.454 kb on - strand, within AO356_07710at 1713.987 kb on + strand, within AO356_07715at 1713.987 kb on + strand, within AO356_07715at 1713.988 kb on - strand, within AO356_07715at 1714.045 kb on - strand, within AO356_07715at 1714.204 kb on - strand, within AO356_07715at 1714.204 kb on - strand, within AO356_07715at 1714.322 kb on + strand, within AO356_07715at 1714.322 kb on + strand, within AO356_07715at 1714.323 kb on - strand, within AO356_07715at 1714.323 kb on - strand, within AO356_07715at 1714.386 kb on - strand, within AO356_07715at 1714.386 kb on - strand, within AO356_07715at 1714.388 kb on - strand, within AO356_07715at 1714.918 kb on + strand, within AO356_07720at 1714.918 kb on + strand, within AO356_07720at 1714.919 kb on - strand, within AO356_07720at 1714.919 kb on - strand, within AO356_07720at 1714.920 kb on + strand, within AO356_07720at 1714.920 kb on + strand, within AO356_07720at 1714.921 kb on - strand, within AO356_07720at 1715.299 kb on + strand, within AO356_07720at 1715.300 kb on - strand, within AO356_07720at 1715.300 kb on - strand, within AO356_07720at 1715.300 kb on - strand, within AO356_07720at 1715.362 kb on + strand, within AO356_07720at 1715.362 kb on + strand, within AO356_07720at 1715.362 kb on + strand, within AO356_07720at 1715.362 kb on + strand, within AO356_07720at 1715.362 kb on + strand, within AO356_07720at 1715.363 kb on - strand, within AO356_07720at 1715.363 kb on - strand, within AO356_07720at 1715.363 kb on - strand, within AO356_07720at 1715.365 kb on - strand, within AO356_07720at 1715.365 kb on - strand, within AO356_07720at 1715.365 kb on - strand, within AO356_07720at 1715.556 kb on + strandat 1715.556 kb on + strandat 1715.556 kb on + strandat 1715.556 kb on + strandat 1715.556 kb on + strandat 1715.556 kb on + strandat 1715.556 kb on + strandat 1715.556 kb on + strandat 1715.556 kb on + strandat 1715.557 kb on - strandat 1715.557 kb on - strandat 1715.557 kb on - strandat 1715.557 kb on - strandat 1715.557 kb on - strandat 1715.557 kb on - strandat 1715.557 kb on - strandat 1715.557 kb on - strandat 1715.557 kb on - strandat 1715.557 kb on - strandat 1715.557 kb on - strandat 1715.601 kb on + strandat 1715.601 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
remove
1,712,671 + AO356_07705 0.88 +1.2
1,712,671 + AO356_07705 0.88 +1.1
1,712,671 + AO356_07705 0.88 +1.0
1,712,671 + AO356_07705 0.88 -2.2
1,712,672 - AO356_07705 0.88 +0.6
1,712,946 - AO356_07710 0.20 -2.7
1,713,111 + AO356_07710 0.39 +0.2
1,713,111 + AO356_07710 0.39 +2.0
1,713,112 - AO356_07710 0.39 -0.0
1,713,156 - AO356_07710 0.44 +3.2
1,713,158 + AO356_07710 0.44 +0.0
1,713,158 + AO356_07710 0.44 -1.4
1,713,231 + AO356_07710 0.53 -2.4
1,713,231 + AO356_07710 0.53 +0.4
1,713,231 + AO356_07710 0.53 -3.3
1,713,232 - AO356_07710 0.53 +2.1
1,713,232 - AO356_07710 0.53 +1.5
1,713,264 + AO356_07710 0.57 +1.2
1,713,264 + AO356_07710 0.57 -1.2
1,713,264 + AO356_07710 0.57 -1.9
1,713,265 - AO356_07710 0.57 -0.9
1,713,265 - AO356_07710 0.57 +2.0
1,713,265 - AO356_07710 0.57 +0.9
1,713,427 + AO356_07710 0.76 +0.0
1,713,453 + AO356_07710 0.79 +0.0
1,713,454 - AO356_07710 0.79 +0.2
1,713,454 - AO356_07710 0.79 +1.9
1,713,987 + AO356_07715 0.36 +0.7
1,713,987 + AO356_07715 0.36 +1.5
1,713,988 - AO356_07715 0.36 +1.4
1,714,045 - AO356_07715 0.42 +0.3
1,714,204 - AO356_07715 0.58 +0.7
1,714,204 - AO356_07715 0.58 +0.3
1,714,322 + AO356_07715 0.70 -1.7
1,714,322 + AO356_07715 0.70 -2.3
1,714,323 - AO356_07715 0.70 +2.1
1,714,323 - AO356_07715 0.70 -1.7
1,714,386 - AO356_07715 0.76 -1.2
1,714,386 - AO356_07715 0.76 -2.4
1,714,388 - AO356_07715 0.77 -0.1
1,714,918 + AO356_07720 0.31 -0.6
1,714,918 + AO356_07720 0.31 -4.0
1,714,919 - AO356_07720 0.31 -0.6
1,714,919 - AO356_07720 0.31 +0.7
1,714,920 + AO356_07720 0.31 +0.0
1,714,920 + AO356_07720 0.31 -0.3
1,714,921 - AO356_07720 0.31 -0.0
1,715,299 + AO356_07720 0.70 +1.2
1,715,300 - AO356_07720 0.70 +0.9
1,715,300 - AO356_07720 0.70 +1.9
1,715,300 - AO356_07720 0.70 -2.6
1,715,362 + AO356_07720 0.77 +1.0
1,715,362 + AO356_07720 0.77 +1.4
1,715,362 + AO356_07720 0.77 -3.4
1,715,362 + AO356_07720 0.77 +0.4
1,715,362 + AO356_07720 0.77 -0.3
1,715,363 - AO356_07720 0.77 -0.8
1,715,363 - AO356_07720 0.77 -0.1
1,715,363 - AO356_07720 0.77 +1.3
1,715,365 - AO356_07720 0.77 -3.3
1,715,365 - AO356_07720 0.77 -1.7
1,715,365 - AO356_07720 0.77 -0.8
1,715,556 + -0.6
1,715,556 + +1.1
1,715,556 + -0.8
1,715,556 + +1.2
1,715,556 + -2.2
1,715,556 + -0.7
1,715,556 + +1.3
1,715,556 + -3.7
1,715,556 + +0.6
1,715,557 - +0.7
1,715,557 - +0.3
1,715,557 - -0.3
1,715,557 - +1.2
1,715,557 - -0.0
1,715,557 - -1.6
1,715,557 - +2.0
1,715,557 - -0.4
1,715,557 - -0.3
1,715,557 - +0.0
1,715,557 - +1.0
1,715,601 + -0.4
1,715,601 + -0.4

Or see this region's nucleotide sequence