Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07520

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07510 and AO356_07515 are separated by 75 nucleotidesAO356_07515 and AO356_07520 are separated by 97 nucleotidesAO356_07520 and AO356_07525 are separated by 59 nucleotidesAO356_07525 and AO356_07530 overlap by 4 nucleotidesAO356_07530 and AO356_07535 are separated by 7 nucleotides AO356_07510: AO356_07510 - DNA repair protein RecN, at 1,663,384 to 1,665,057 _07510 AO356_07515: AO356_07515 - Fur family transcriptional regulator, at 1,665,133 to 1,665,537 _07515 AO356_07520: AO356_07520 - hypothetical protein, at 1,665,635 to 1,666,162 _07520 AO356_07525: AO356_07525 - protein RnfH, at 1,666,222 to 1,666,524 _07525 AO356_07530: AO356_07530 - ribosome association toxin RatA, at 1,666,521 to 1,666,964 _07530 AO356_07535: AO356_07535 - symporter, at 1,666,972 to 1,668,375 _07535 Position (kb) 1665 1666 1667Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1664.756 kb on + strand, within AO356_07510at 1664.756 kb on + strand, within AO356_07510at 1664.757 kb on - strand, within AO356_07510at 1664.757 kb on - strand, within AO356_07510at 1664.894 kb on + strandat 1664.894 kb on + strandat 1664.895 kb on - strandat 1665.134 kb on + strandat 1665.134 kb on + strandat 1665.135 kb on - strandat 1665.135 kb on - strandat 1665.135 kb on - strandat 1666.160 kb on + strandat 1666.224 kb on - strandat 1666.502 kb on + strandat 1666.502 kb on + strandat 1666.503 kb on - strandat 1666.503 kb on - strandat 1666.503 kb on - strandat 1666.514 kb on - strandat 1666.514 kb on - strandat 1666.514 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1666.967 kb on - strandat 1667.000 kb on - strandat 1667.000 kb on - strandat 1667.000 kb on - strandat 1667.025 kb on - strandat 1667.025 kb on - strandat 1667.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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1,664,756 + AO356_07510 0.82 -1.0
1,664,756 + AO356_07510 0.82 +0.1
1,664,757 - AO356_07510 0.82 +0.6
1,664,757 - AO356_07510 0.82 +0.4
1,664,894 + -0.8
1,664,894 + +0.7
1,664,895 - -1.3
1,665,134 + -2.6
1,665,134 + -0.1
1,665,135 - -0.2
1,665,135 - +1.7
1,665,135 - -0.0
1,666,160 + -2.9
1,666,224 - -1.8
1,666,502 + -1.2
1,666,502 + -2.8
1,666,503 - -0.6
1,666,503 - -1.2
1,666,503 - +0.6
1,666,514 - -0.0
1,666,514 - +0.1
1,666,514 - -0.0
1,666,967 - +1.6
1,666,967 - +1.1
1,666,967 - +0.4
1,666,967 - +1.7
1,666,967 - +1.7
1,666,967 - +0.4
1,666,967 - +1.1
1,666,967 - -0.6
1,666,967 - +0.9
1,666,967 - -1.6
1,667,000 - +0.4
1,667,000 - -0.8
1,667,000 - +1.3
1,667,025 - +2.4
1,667,025 - +2.0
1,667,025 - +0.7

Or see this region's nucleotide sequence