Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04735 and AO356_04740 are separated by 832 nucleotides AO356_04740 and AO356_04745 are separated by 96 nucleotides AO356_04745 and AO356_04750 are separated by 328 nucleotides
AO356_04735: AO356_04735 - hypothetical protein, at 1,063,069 to 1,066,800
_04735
AO356_04740: AO356_04740 - hypothetical protein, at 1,067,633 to 1,068,037
_04740
AO356_04745: AO356_04745 - hypothetical protein, at 1,068,134 to 1,068,637
_04745
AO356_04750: AO356_04750 - diguanylate cyclase, at 1,068,966 to 1,070,315
_04750
Position (kb)
1067
1068
1069 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1066.659 kb on + strand at 1066.659 kb on + strand at 1066.659 kb on + strand at 1066.659 kb on + strand at 1066.659 kb on + strand at 1066.659 kb on + strand at 1066.660 kb on - strand at 1066.664 kb on - strand at 1066.664 kb on - strand at 1066.701 kb on + strand at 1066.763 kb on - strand at 1066.763 kb on - strand at 1066.763 kb on - strand at 1066.763 kb on - strand at 1066.816 kb on + strand at 1066.825 kb on + strand at 1066.825 kb on + strand at 1066.826 kb on - strand at 1066.826 kb on - strand at 1066.826 kb on - strand at 1066.826 kb on - strand at 1066.826 kb on - strand at 1066.944 kb on + strand at 1066.944 kb on + strand at 1066.957 kb on - strand at 1067.017 kb on + strand at 1067.023 kb on + strand at 1067.023 kb on + strand at 1067.090 kb on + strand at 1067.090 kb on + strand at 1067.090 kb on + strand at 1067.090 kb on + strand at 1067.091 kb on - strand at 1067.091 kb on - strand at 1067.091 kb on - strand at 1067.123 kb on + strand at 1067.124 kb on - strand at 1067.134 kb on + strand at 1067.134 kb on + strand at 1067.163 kb on + strand at 1067.189 kb on - strand at 1067.189 kb on - strand at 1067.203 kb on + strand at 1067.203 kb on + strand at 1067.203 kb on + strand at 1067.203 kb on + strand at 1067.203 kb on + strand at 1067.203 kb on + strand at 1067.203 kb on + strand at 1067.204 kb on - strand at 1067.204 kb on - strand at 1067.204 kb on - strand at 1067.204 kb on - strand at 1067.204 kb on - strand at 1067.204 kb on - strand at 1067.312 kb on - strand at 1067.462 kb on - strand at 1067.462 kb on - strand at 1067.462 kb on - strand at 1067.462 kb on - strand at 1067.566 kb on + strand at 1067.566 kb on + strand at 1067.567 kb on - strand at 1067.567 kb on - strand at 1067.570 kb on + strand at 1067.570 kb on + strand at 1067.571 kb on - strand at 1067.824 kb on + strand, within AO356_04740 at 1067.824 kb on + strand, within AO356_04740 at 1067.825 kb on - strand, within AO356_04740 at 1067.871 kb on + strand, within AO356_04740 at 1067.957 kb on + strand, within AO356_04740 at 1067.958 kb on - strand, within AO356_04740 at 1068.115 kb on + strand at 1068.116 kb on - strand at 1068.221 kb on + strand, within AO356_04745 at 1068.221 kb on + strand, within AO356_04745 at 1068.445 kb on + strand, within AO356_04745 at 1068.445 kb on + strand, within AO356_04745 at 1068.446 kb on - strand, within AO356_04745 at 1068.453 kb on + strand, within AO356_04745 at 1068.453 kb on + strand, within AO356_04745 at 1068.454 kb on - strand, within AO356_04745 at 1068.454 kb on - strand, within AO356_04745 at 1068.454 kb on - strand, within AO356_04745 at 1068.654 kb on - strand at 1068.656 kb on + strand at 1068.657 kb on - strand at 1068.657 kb on - strand at 1068.704 kb on + strand at 1068.743 kb on + strand at 1068.743 kb on + strand at 1068.744 kb on - strand at 1068.863 kb on + strand at 1068.864 kb on - strand at 1068.864 kb on - strand at 1068.871 kb on - strand at 1068.898 kb on + strand at 1068.898 kb on + strand at 1068.899 kb on - strand at 1068.899 kb on - strand at 1068.899 kb on - strand at 1068.899 kb on - strand at 1068.899 kb on - strand at 1068.971 kb on + strand at 1068.971 kb on + strand at 1068.971 kb on + strand at 1068.971 kb on + strand at 1068.972 kb on - strand at 1069.007 kb on - strand at 1069.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 1,066,659 + +0.7 1,066,659 + -1.4 1,066,659 + +0.4 1,066,659 + -1.7 1,066,659 + -1.0 1,066,659 + +1.6 1,066,660 - -0.7 1,066,664 - -1.9 1,066,664 - +1.3 1,066,701 + +0.8 1,066,763 - -1.5 1,066,763 - +0.1 1,066,763 - -0.3 1,066,763 - -0.4 1,066,816 + -0.4 1,066,825 + -0.1 1,066,825 + -1.7 1,066,826 - +0.6 1,066,826 - -0.7 1,066,826 - -2.7 1,066,826 - +1.1 1,066,826 - +1.4 1,066,944 + +1.0 1,066,944 + -1.0 1,066,957 - -0.7 1,067,017 + +0.9 1,067,023 + -0.1 1,067,023 + +1.6 1,067,090 + -1.9 1,067,090 + +3.1 1,067,090 + -2.3 1,067,090 + +0.2 1,067,091 - +0.6 1,067,091 - +1.1 1,067,091 - +0.7 1,067,123 + +0.9 1,067,124 - +0.7 1,067,134 + +0.5 1,067,134 + -0.1 1,067,163 + +1.0 1,067,189 - -0.1 1,067,189 - -0.0 1,067,203 + -1.5 1,067,203 + -0.3 1,067,203 + -2.4 1,067,203 + +0.1 1,067,203 + +1.2 1,067,203 + +0.2 1,067,203 + -2.0 1,067,204 - -1.1 1,067,204 - +0.1 1,067,204 - -1.5 1,067,204 - +0.9 1,067,204 - +0.3 1,067,204 - +1.2 1,067,312 - +1.6 1,067,462 - +1.3 1,067,462 - -3.1 1,067,462 - +3.5 1,067,462 - +0.3 1,067,566 + +1.0 1,067,566 + -0.1 1,067,567 - -1.5 1,067,567 - -1.1 1,067,570 + +0.6 1,067,570 + -0.6 1,067,571 - -1.5 1,067,824 + AO356_04740 0.47 +1.8 1,067,824 + AO356_04740 0.47 +0.5 1,067,825 - AO356_04740 0.47 -0.1 1,067,871 + AO356_04740 0.59 +1.1 1,067,957 + AO356_04740 0.80 -2.0 1,067,958 - AO356_04740 0.80 -0.2 1,068,115 + -0.8 1,068,116 - -0.1 1,068,221 + AO356_04745 0.17 -0.0 1,068,221 + AO356_04745 0.17 -1.7 1,068,445 + AO356_04745 0.62 -2.0 1,068,445 + AO356_04745 0.62 +0.3 1,068,446 - AO356_04745 0.62 -0.8 1,068,453 + AO356_04745 0.63 +0.5 1,068,453 + AO356_04745 0.63 +0.3 1,068,454 - AO356_04745 0.63 +0.9 1,068,454 - AO356_04745 0.63 -2.9 1,068,454 - AO356_04745 0.63 -2.0 1,068,654 - +0.6 1,068,656 + -2.3 1,068,657 - -1.6 1,068,657 - -2.0 1,068,704 + -0.7 1,068,743 + +1.5 1,068,743 + -0.9 1,068,744 - -2.0 1,068,863 + -2.9 1,068,864 - -0.4 1,068,864 - -0.7 1,068,871 - +0.5 1,068,898 + -0.5 1,068,898 + +0.2 1,068,899 - +0.7 1,068,899 - -1.3 1,068,899 - +0.7 1,068,899 - +0.3 1,068,899 - +0.9 1,068,971 + +0.2 1,068,971 + +1.0 1,068,971 + -2.0 1,068,971 + -0.0 1,068,972 - -0.7 1,069,007 - +1.0 1,069,007 - +1.8
Or see this region's nucleotide sequence