Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02690 and AO356_02695 overlap by 26 nucleotides AO356_02695 and AO356_02700 are separated by 3 nucleotides AO356_02700 and AO356_02705 are separated by 8 nucleotides AO356_02705 and AO356_02710 overlap by 8 nucleotides
AO356_02690: AO356_02690 - type III secretion system protein SpaS, at 590,851 to 591,885
_02690
AO356_02695: AO356_02695 - type III secretion system protein SpaR, at 591,860 to 592,663
_02695
AO356_02700: AO356_02700 - type III secretion system protein SpaQ, at 592,667 to 592,921
_02700
AO356_02705: AO356_02705 - type III secretion system protein, at 592,930 to 593,589
_02705
AO356_02710: AO356_02710 - flagellar motor switch/type III secretory pathway protein, at 593,582 to 594,511
_02710
Position (kb) 591
592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 591.003 kb on - strand, within AO356_02690 at 591.544 kb on + strand, within AO356_02690 at 591.545 kb on - strand, within AO356_02690 at 591.671 kb on + strand, within AO356_02690 at 591.672 kb on - strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.975 kb on + strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 592.203 kb on + strand, within AO356_02695 at 592.203 kb on + strand, within AO356_02695 at 592.494 kb on + strand, within AO356_02695 at 592.494 kb on + strand, within AO356_02695 at 592.668 kb on + strand at 592.885 kb on - strand, within AO356_02700 at 592.885 kb on - strand, within AO356_02700 at 592.905 kb on + strand at 592.906 kb on - strand at 592.906 kb on - strand at 592.931 kb on + strand at 592.931 kb on + strand at 592.932 kb on - strand at 592.949 kb on + strand at 592.949 kb on + strand at 592.950 kb on - strand at 592.950 kb on - strand at 593.108 kb on + strand, within AO356_02705 at 593.108 kb on + strand, within AO356_02705 at 593.108 kb on + strand, within AO356_02705 at 593.109 kb on - strand, within AO356_02705 at 593.109 kb on - strand, within AO356_02705 at 593.109 kb on - strand, within AO356_02705 at 593.109 kb on - strand, within AO356_02705 at 593.114 kb on + strand, within AO356_02705 at 593.114 kb on + strand, within AO356_02705 at 593.115 kb on - strand, within AO356_02705 at 593.156 kb on + strand, within AO356_02705 at 593.157 kb on - strand, within AO356_02705 at 593.276 kb on + strand, within AO356_02705 at 593.276 kb on + strand, within AO356_02705 at 593.276 kb on + strand, within AO356_02705 at 593.277 kb on - strand, within AO356_02705 at 593.277 kb on - strand, within AO356_02705 at 593.288 kb on + strand, within AO356_02705 at 593.288 kb on + strand, within AO356_02705 at 593.288 kb on + strand, within AO356_02705 at 593.289 kb on - strand, within AO356_02705 at 593.289 kb on - strand, within AO356_02705 at 593.297 kb on + strand, within AO356_02705 at 593.298 kb on - strand, within AO356_02705 at 593.347 kb on - strand, within AO356_02705 at 593.369 kb on + strand, within AO356_02705 at 593.370 kb on - strand, within AO356_02705 at 593.370 kb on - strand, within AO356_02705 at 593.372 kb on + strand, within AO356_02705 at 593.372 kb on + strand, within AO356_02705 at 593.513 kb on + strand, within AO356_02705 at 593.514 kb on - strand, within AO356_02705
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 591,003 - AO356_02690 0.15 -0.7 591,544 + AO356_02690 0.67 -0.3 591,545 - AO356_02690 0.67 +0.2 591,671 + AO356_02690 0.79 +0.8 591,672 - AO356_02690 0.79 -0.9 591,758 + AO356_02690 0.88 -1.5 591,758 + AO356_02690 0.88 +1.0 591,758 + AO356_02690 0.88 +1.7 591,758 + AO356_02690 0.88 +0.1 591,759 - AO356_02690 0.88 -0.8 591,759 - AO356_02690 0.88 +0.9 591,759 - AO356_02690 0.88 -0.5 591,759 - AO356_02690 0.88 +1.4 591,759 - AO356_02690 0.88 -0.0 591,759 - AO356_02690 0.88 +1.0 591,759 - AO356_02690 0.88 -0.5 591,975 + AO356_02695 0.14 -0.5 591,976 - AO356_02695 0.14 +0.9 591,976 - AO356_02695 0.14 -1.6 591,976 - AO356_02695 0.14 -0.1 592,203 + AO356_02695 0.43 -0.1 592,203 + AO356_02695 0.43 -3.0 592,494 + AO356_02695 0.79 -0.1 592,494 + AO356_02695 0.79 -0.5 592,668 + +1.8 592,885 - AO356_02700 0.85 -2.5 592,885 - AO356_02700 0.85 -0.0 592,905 + +0.7 592,906 - +0.7 592,906 - -1.1 592,931 + +0.2 592,931 + +0.2 592,932 - -1.4 592,949 + -1.2 592,949 + +0.1 592,950 - +0.2 592,950 - -0.8 593,108 + AO356_02705 0.27 -0.5 593,108 + AO356_02705 0.27 -0.1 593,108 + AO356_02705 0.27 -2.3 593,109 - AO356_02705 0.27 +0.2 593,109 - AO356_02705 0.27 -1.6 593,109 - AO356_02705 0.27 -2.1 593,109 - AO356_02705 0.27 -1.7 593,114 + AO356_02705 0.28 +0.2 593,114 + AO356_02705 0.28 -0.6 593,115 - AO356_02705 0.28 +0.6 593,156 + AO356_02705 0.34 -2.4 593,157 - AO356_02705 0.34 +0.2 593,276 + AO356_02705 0.52 -2.8 593,276 + AO356_02705 0.52 -0.4 593,276 + AO356_02705 0.52 +1.1 593,277 - AO356_02705 0.53 +0.4 593,277 - AO356_02705 0.53 +1.2 593,288 + AO356_02705 0.54 -1.8 593,288 + AO356_02705 0.54 -1.8 593,288 + AO356_02705 0.54 +0.3 593,289 - AO356_02705 0.54 +0.3 593,289 - AO356_02705 0.54 +0.5 593,297 + AO356_02705 0.56 -1.4 593,298 - AO356_02705 0.56 -0.1 593,347 - AO356_02705 0.63 +0.2 593,369 + AO356_02705 0.67 -0.6 593,370 - AO356_02705 0.67 +2.0 593,370 - AO356_02705 0.67 +0.1 593,372 + AO356_02705 0.67 -0.9 593,372 + AO356_02705 0.67 +3.2 593,513 + AO356_02705 0.88 -0.8 593,514 - AO356_02705 0.88 -1.6
Or see this region's nucleotide sequence