Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02245

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02235 and AO356_02240 are separated by 94 nucleotidesAO356_02240 and AO356_02245 overlap by 4 nucleotidesAO356_02245 and AO356_02250 are separated by 42 nucleotides AO356_02235: AO356_02235 - cell division protein FtsX, at 479,186 to 480,436 _02235 AO356_02240: AO356_02240 - pilus assembly protein PilZ, at 480,531 to 481,127 _02240 AO356_02245: AO356_02245 - glycerophosphodiester phosphodiesterase, at 481,124 to 481,846 _02245 AO356_02250: AO356_02250 - pyridine nucleotide-disulfide oxidoreductase, at 481,889 to 483,283 _02250 Position (kb) 481 482Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 480.497 kb on - strandat 480.497 kb on - strandat 480.497 kb on - strandat 480.497 kb on - strandat 480.542 kb on - strandat 480.542 kb on - strandat 480.542 kb on - strandat 480.542 kb on - strandat 480.565 kb on - strandat 480.750 kb on + strand, within AO356_02240at 480.917 kb on - strand, within AO356_02240at 481.047 kb on + strand, within AO356_02240at 481.048 kb on - strand, within AO356_02240at 481.106 kb on + strandat 481.107 kb on - strandat 481.107 kb on - strandat 481.107 kb on - strandat 481.107 kb on - strandat 481.112 kb on + strandat 481.136 kb on + strandat 481.136 kb on + strandat 481.136 kb on + strandat 481.137 kb on - strandat 481.137 kb on - strandat 481.137 kb on - strandat 481.137 kb on - strandat 481.137 kb on - strandat 481.212 kb on + strand, within AO356_02245at 481.213 kb on - strand, within AO356_02245at 481.343 kb on + strand, within AO356_02245at 481.343 kb on + strand, within AO356_02245at 481.343 kb on + strand, within AO356_02245at 481.343 kb on + strand, within AO356_02245at 481.344 kb on - strand, within AO356_02245at 481.344 kb on - strand, within AO356_02245at 481.613 kb on + strand, within AO356_02245at 481.613 kb on + strand, within AO356_02245at 481.649 kb on + strand, within AO356_02245at 481.650 kb on - strand, within AO356_02245at 481.801 kb on + strandat 481.801 kb on + strandat 481.802 kb on - strandat 481.914 kb on + strandat 481.951 kb on - strandat 482.172 kb on + strand, within AO356_02250at 482.238 kb on + strand, within AO356_02250at 482.238 kb on + strand, within AO356_02250at 482.239 kb on - strand, within AO356_02250at 482.239 kb on - strand, within AO356_02250at 482.239 kb on - strand, within AO356_02250at 482.239 kb on - strand, within AO356_02250at 482.367 kb on + strand, within AO356_02250at 482.367 kb on + strand, within AO356_02250at 482.367 kb on + strand, within AO356_02250at 482.367 kb on + strand, within AO356_02250at 482.367 kb on + strand, within AO356_02250at 482.367 kb on + strand, within AO356_02250at 482.368 kb on - strand, within AO356_02250at 482.368 kb on - strand, within AO356_02250at 482.368 kb on - strand, within AO356_02250at 482.368 kb on - strand, within AO356_02250at 482.368 kb on - strand, within AO356_02250at 482.368 kb on - strand, within AO356_02250at 482.568 kb on + strand, within AO356_02250at 482.568 kb on + strand, within AO356_02250at 482.568 kb on + strand, within AO356_02250at 482.569 kb on - strand, within AO356_02250at 482.569 kb on - strand, within AO356_02250at 482.569 kb on - strand, within AO356_02250at 482.613 kb on + strand, within AO356_02250at 482.614 kb on - strand, within AO356_02250at 482.614 kb on - strand, within AO356_02250at 482.715 kb on + strand, within AO356_02250at 482.716 kb on - strand, within AO356_02250at 482.716 kb on - strand, within AO356_02250at 482.797 kb on - strand, within AO356_02250at 482.797 kb on - strand, within AO356_02250

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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480,497 - +0.2
480,497 - -1.1
480,497 - +1.5
480,497 - -0.4
480,542 - -0.3
480,542 - +0.2
480,542 - -0.0
480,542 - -1.1
480,565 - -1.4
480,750 + AO356_02240 0.37 -1.7
480,917 - AO356_02240 0.65 -2.0
481,047 + AO356_02240 0.86 +0.4
481,048 - AO356_02240 0.87 +1.9
481,106 + -1.1
481,107 - -0.4
481,107 - -1.2
481,107 - -3.1
481,107 - -0.1
481,112 + +2.0
481,136 + +1.3
481,136 + -0.8
481,136 + +1.2
481,137 - +0.0
481,137 - +0.2
481,137 - -1.1
481,137 - +1.2
481,137 - +0.6
481,212 + AO356_02245 0.12 +0.2
481,213 - AO356_02245 0.12 +0.6
481,343 + AO356_02245 0.30 -1.8
481,343 + AO356_02245 0.30 -1.7
481,343 + AO356_02245 0.30 -1.0
481,343 + AO356_02245 0.30 -0.7
481,344 - AO356_02245 0.30 -0.8
481,344 - AO356_02245 0.30 -2.6
481,613 + AO356_02245 0.68 +1.7
481,613 + AO356_02245 0.68 +0.3
481,649 + AO356_02245 0.73 +0.2
481,650 - AO356_02245 0.73 +0.9
481,801 + +0.4
481,801 + +1.1
481,802 - -0.2
481,914 + -2.6
481,951 - -2.6
482,172 + AO356_02250 0.20 -1.4
482,238 + AO356_02250 0.25 -2.0
482,238 + AO356_02250 0.25 -1.4
482,239 - AO356_02250 0.25 -2.1
482,239 - AO356_02250 0.25 -1.4
482,239 - AO356_02250 0.25 -0.8
482,239 - AO356_02250 0.25 -0.5
482,367 + AO356_02250 0.34 +0.8
482,367 + AO356_02250 0.34 -0.8
482,367 + AO356_02250 0.34 +1.2
482,367 + AO356_02250 0.34 -1.4
482,367 + AO356_02250 0.34 -1.9
482,367 + AO356_02250 0.34 -0.8
482,368 - AO356_02250 0.34 -1.8
482,368 - AO356_02250 0.34 -1.8
482,368 - AO356_02250 0.34 -2.2
482,368 - AO356_02250 0.34 +0.2
482,368 - AO356_02250 0.34 -1.4
482,368 - AO356_02250 0.34 -1.4
482,568 + AO356_02250 0.49 +0.2
482,568 + AO356_02250 0.49 -2.4
482,568 + AO356_02250 0.49 -1.6
482,569 - AO356_02250 0.49 -1.4
482,569 - AO356_02250 0.49 -3.5
482,569 - AO356_02250 0.49 -2.4
482,613 + AO356_02250 0.52 -3.2
482,614 - AO356_02250 0.52 -1.8
482,614 - AO356_02250 0.52 -2.1
482,715 + AO356_02250 0.59 +0.8
482,716 - AO356_02250 0.59 -2.4
482,716 - AO356_02250 0.59 -1.4
482,797 - AO356_02250 0.65 -0.8
482,797 - AO356_02250 0.65 -1.4

Or see this region's nucleotide sequence