Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02190

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02185 and AO356_02190 are separated by 346 nucleotidesAO356_02190 and AO356_02195 are separated by 201 nucleotidesAO356_02195 and AO356_02200 are separated by 109 nucleotides AO356_02185: AO356_02185 - chemotaxis protein CheY, at 469,893 to 471,074 _02185 AO356_02190: AO356_02190 - hypothetical protein, at 471,421 to 472,110 _02190 AO356_02195: AO356_02195 - phosphatase, at 472,312 to 472,932 _02195 AO356_02200: AO356_02200 - chromosome partitioning protein ParA, at 473,042 to 473,305 _02200 Position (kb) 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1at 471.097 kb on - strandat 471.139 kb on - strandat 471.155 kb on - strandat 471.155 kb on - strandat 471.191 kb on - strandat 471.191 kb on - strandat 471.201 kb on - strandat 471.201 kb on - strandat 471.201 kb on - strandat 471.269 kb on + strandat 471.286 kb on + strandat 471.286 kb on + strandat 471.287 kb on - strandat 471.287 kb on - strandat 471.309 kb on - strandat 471.311 kb on - strandat 471.311 kb on - strandat 471.476 kb on + strandat 471.476 kb on + strandat 471.497 kb on + strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.498 kb on - strand, within AO356_02190at 471.597 kb on + strand, within AO356_02190at 471.598 kb on - strand, within AO356_02190at 471.598 kb on - strand, within AO356_02190at 471.598 kb on - strand, within AO356_02190at 471.599 kb on + strand, within AO356_02190at 471.599 kb on + strand, within AO356_02190at 471.600 kb on - strand, within AO356_02190at 471.618 kb on - strand, within AO356_02190at 471.618 kb on - strand, within AO356_02190at 471.683 kb on + strand, within AO356_02190at 471.683 kb on + strand, within AO356_02190at 471.684 kb on - strand, within AO356_02190at 471.684 kb on - strand, within AO356_02190at 471.684 kb on - strand, within AO356_02190at 471.684 kb on - strand, within AO356_02190at 471.932 kb on + strand, within AO356_02190at 471.932 kb on + strand, within AO356_02190at 471.932 kb on + strand, within AO356_02190at 471.933 kb on - strand, within AO356_02190at 471.933 kb on - strand, within AO356_02190at 471.933 kb on - strand, within AO356_02190at 471.938 kb on + strand, within AO356_02190at 471.965 kb on + strand, within AO356_02190at 471.965 kb on + strand, within AO356_02190at 471.965 kb on + strand, within AO356_02190at 471.965 kb on + strand, within AO356_02190at 471.965 kb on + strand, within AO356_02190at 471.966 kb on - strand, within AO356_02190at 471.966 kb on - strand, within AO356_02190at 471.966 kb on - strand, within AO356_02190at 472.090 kb on + strandat 472.090 kb on + strandat 472.161 kb on - strandat 472.161 kb on - strandat 472.169 kb on + strandat 472.170 kb on - strandat 472.172 kb on + strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.173 kb on - strandat 472.175 kb on - strandat 472.175 kb on - strandat 472.175 kb on - strandat 472.175 kb on - strandat 472.221 kb on - strandat 472.283 kb on - strandat 472.294 kb on + strandat 472.294 kb on + strandat 472.361 kb on + strandat 472.491 kb on + strand, within AO356_02195at 472.595 kb on - strand, within AO356_02195at 472.718 kb on + strand, within AO356_02195at 472.718 kb on + strand, within AO356_02195at 472.719 kb on - strand, within AO356_02195at 472.915 kb on - strandat 472.915 kb on - strandat 472.965 kb on - strandat 472.965 kb on - strandat 472.965 kb on - strandat 472.970 kb on + strandat 472.970 kb on + strandat 473.021 kb on - strandat 473.027 kb on - strandat 473.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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471,097 - +1.2
471,139 - +0.2
471,155 - -2.6
471,155 - -0.5
471,191 - +0.1
471,191 - +0.5
471,201 - +0.2
471,201 - -2.6
471,201 - -1.0
471,269 + +1.4
471,286 + -2.6
471,286 + +0.8
471,287 - -1.4
471,287 - -0.4
471,309 - +0.2
471,311 - +0.1
471,311 - -0.5
471,476 + -1.4
471,476 + -1.6
471,497 + AO356_02190 0.11 -0.8
471,498 - AO356_02190 0.11 -0.4
471,498 - AO356_02190 0.11 -0.8
471,498 - AO356_02190 0.11 -2.1
471,498 - AO356_02190 0.11 +1.2
471,498 - AO356_02190 0.11 -2.4
471,498 - AO356_02190 0.11 +0.8
471,597 + AO356_02190 0.26 -2.6
471,598 - AO356_02190 0.26 -1.1
471,598 - AO356_02190 0.26 -0.8
471,598 - AO356_02190 0.26 -0.1
471,599 + AO356_02190 0.26 +0.2
471,599 + AO356_02190 0.26 -2.6
471,600 - AO356_02190 0.26 -0.8
471,618 - AO356_02190 0.29 -1.6
471,618 - AO356_02190 0.29 -1.4
471,683 + AO356_02190 0.38 +0.2
471,683 + AO356_02190 0.38 -1.4
471,684 - AO356_02190 0.38 -2.6
471,684 - AO356_02190 0.38 -1.4
471,684 - AO356_02190 0.38 -0.0
471,684 - AO356_02190 0.38 -0.8
471,932 + AO356_02190 0.74 -2.6
471,932 + AO356_02190 0.74 -1.4
471,932 + AO356_02190 0.74 -1.4
471,933 - AO356_02190 0.74 -2.8
471,933 - AO356_02190 0.74 +0.8
471,933 - AO356_02190 0.74 -0.4
471,938 + AO356_02190 0.75 -1.8
471,965 + AO356_02190 0.79 +1.2
471,965 + AO356_02190 0.79 -0.8
471,965 + AO356_02190 0.79 +1.2
471,965 + AO356_02190 0.79 -1.4
471,965 + AO356_02190 0.79 -1.8
471,966 - AO356_02190 0.79 +0.2
471,966 - AO356_02190 0.79 -2.1
471,966 - AO356_02190 0.79 -0.8
472,090 + -1.4
472,090 + -1.8
472,161 - -1.8
472,161 - +0.9
472,169 + -0.8
472,170 - -1.4
472,172 + -0.3
472,173 - +0.4
472,173 - +0.2
472,173 - +0.6
472,173 - -0.5
472,173 - -1.5
472,173 - +1.0
472,173 - -2.5
472,175 - -1.8
472,175 - -1.8
472,175 - -1.8
472,175 - +0.6
472,221 - -0.2
472,283 - -1.1
472,294 + +0.7
472,294 + -2.6
472,361 + +1.6
472,491 + AO356_02195 0.29 +0.6
472,595 - AO356_02195 0.46 -0.8
472,718 + AO356_02195 0.65 -3.3
472,718 + AO356_02195 0.65 -0.1
472,719 - AO356_02195 0.66 -0.2
472,915 - +1.2
472,915 - -1.4
472,965 - -2.1
472,965 - -1.1
472,965 - -0.9
472,970 + -1.8
472,970 + -3.3
473,021 - +0.9
473,027 - -0.4
473,035 + -2.1

Or see this region's nucleotide sequence